Listening on http://127.0.0.1:44257
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p24073/Proteomics/QEXACTIVEHF_2/wilkin_20230301_20230301/20230301_006_S477587_MA14.raw, /srv/www/htdocs//p24073/Proteomics/QEXACTIVEHF_2/wilkin_20230301_20230301/20230301_005_S477586_MA13.raw
vals$rawfile: /srv/www/htdocs//p24073/Proteomics/QEXACTIVEHF_2/wilkin_20230301_20230301/20230301_006_S477587_MA14.raw,
	/srv/www/htdocs//p24073/Proteomics/QEXACTIVEHF_2/wilkin_20230301_20230301/20230301_005_S477586_MA13.raw
reading index for 20230301_005_S477586_MA13.raw...
reading took21.998seconds

reading index for 20230301_006_S477587_MA14.raw...
reading took25.703seconds

`geom_smooth()` using formula = 'y ~ x'
plotCycleLoad
plotCycleTime
Warning: Computation failed in `stat_smooth()`
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
Warning: Computation failed in `stat_smooth()`
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
plotLockMassCorrection
plotMassDistribution
plotTicBasepeak
saving 'login and webservicepassword' ...
2357159 2357158 
list(list(`_classname` = "workunit", `_id` = 302007, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "project", `_id` = 31230), created = "2024-04-03 14:51:06", createdby = "cpanse", description = "input files:\np24073/Proteomics/QEXACTIVEHF_2/wilkin_20230301_20230301/20230301_006_S477587_MA14.raw\np24073/Proteomics/QEXACTIVEHF_2/wilkin_20230301_20230301/20230301_005_S477586_MA13.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.12.26.2.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2357159), list(`_classname` = "resource", `_id` = 2357158)), modified = "2024-04-03 14:51:06", modifiedby = "cpanse", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2473721, container = list(`_classname` = "project", `_id` = 31230), created = "2024-04-03 14:51:06", createdby = "cpanse", filechecksum = "1526ebda327c99649fe93e4251b90588", junk = "false", modified = "2024-04-03 14:51:06", modifiedby = "cpanse", name = "WU302007-20240403-1451-rawDiag.pdf", relativepath = "container_31230/workunit_302007/WU302007-20240403-1451-rawDiag.pdf", size = "164314", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31230/workunit_302007/WU302007-20240403-1451-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31230/workunit_302007/WU302007-20240403-1451-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302007)))
The current plot is available as workunit 302007.
Rendering actionButton to link workunit 302007 in B-Fabric.
saving 'login and webservicepassword' ...