Listening on http://127.0.0.1:38425 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/150mix3.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank1.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank7.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P3.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank8.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank3.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank4.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P1.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P7.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P4.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P6.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank9.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank6.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank10.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank5.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P2.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/150mix1.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P5.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank2.raw vals$rawfile: /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/150mix3.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank1.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank7.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P3.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank8.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank3.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank4.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P1.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P7.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P4.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P6.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank9.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank6.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank10.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank5.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P2.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/150mix1.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P5.raw, /srv/www/htdocs//p31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank2.raw reading index for HF_WpH9V2_IROA_P7.raw... reading took8.85seconds reading index for blank5.raw... reading took9.571seconds reading index for blank3.raw... reading took9.673seconds reading index for 150mix3.raw... reading took9.73seconds reading index for blank1.raw... reading took9.742seconds reading index for blank7.raw... reading took9.744seconds reading index for HF_WpH9V2_IROA_P1.raw... reading took9.742seconds reading index for HF_WpH9V2_IROA_P4.raw... reading took9.726seconds reading index for blank10.raw... reading took9.758seconds reading index for HF_WpH9V2_IROA_P3.raw... reading took9.776seconds reading index for HF_WpH9V2_IROA_P6.raw... reading took9.776seconds reading index for 150mix1.raw... reading took9.72seconds reading index for blank8.raw... reading took9.825seconds reading index for HF_WpH9V2_IROA_P2.raw... reading took9.802seconds reading index for blank2.raw... reading took9.815seconds reading index for HF_WpH9V2_IROA_P5.raw... reading took9.915seconds reading index for blank9.raw... reading took9.982seconds reading index for blank6.raw... reading took10.04seconds reading index for blank4.raw... reading took10.067seconds plotTicBasepeak Warning: Error in : One or both dimensions exceed the maximum (50000px). - Use `options(ragg.max_dim = ...)` to change the max Warning: May cause the R session to crash 105: stop 104: get_dims 103: 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp Warning: Error in : One or both dimensions exceed the maximum (50000px). - Use `options(ragg.max_dim = ...)` to change the max Warning: May cause the R session to crash 105: stop 104: get_dims 103: 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp saving 'login and webservicepassword' ... Warning in resources$relativepath == input$relativepath : longer object length is not a multiple of shorter object length list(list(`_classname` = "workunit", `_id` = 302008, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "project", `_id` = 31230), created = "2024-04-03 15:14:03", createdby = "cpanse", description = "input files:\np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/150mix3.raw \np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank1.raw \np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank7.raw \np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P3.raw\np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank8.raw \np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P4.raw\np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P1.raw\np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank4.raw \np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank3.raw \np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P7.raw\np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P6.raw\np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank9.raw \np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank6.raw \np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank10.raw \np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank5.raw \np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P2.raw\np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/150mix1.raw \np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/HF_WpH9V2_IROA_P5.raw\np31230/Metabolomics/QEXACTIVEHF_2/martinaza_20240131_p31230_WpH9V2_transfer_HF/blank2.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2460236), list(`_classname` = "resource", `_id` = 2460234)), modified = "2024-04-03 15:14:03", modifiedby = "cpanse", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2473722, container = list(`_classname` = "project", `_id` = 31230), created = "2024-04-03 15:14:04", createdby = "cpanse", filechecksum = "42598c5fa1e85c2a6ceb61ac3dd6883f", junk = "false", modified = "2024-04-03 15:14:04", modifiedby = "cpanse", name = "WU302008-20240403-1514-rawDiag.pdf", relativepath = "container_31230/workunit_302008/WU302008-20240403-1514-rawDiag.pdf", size = "275393", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31230/workunit_302008/WU302008-20240403-1514-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31230/workunit_302008/WU302008-20240403-1514-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302008))) The current plot is available as workunit 302008. Rendering actionButton to link workunit 302008 in B-Fabric. saving 'login and webservicepassword' ... plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix1_1ng_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix1_1ng_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_blank_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_blank_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix3_1ng_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix2_1ng_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix3_1ng_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix2_1ng_1.raw vals$rawfile: /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix1_1ng_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix1_1ng_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_blank_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_blank_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix3_1ng_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix2_1ng_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix3_1ng_1.raw, /srv/www/htdocs//p32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix2_1ng_1.raw reading index for sstreb_20230721_FIAplus_neg_15cm_BEHC18_blank_1.raw... reading took23.195seconds reading index for sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix2_1ng_1.raw... reading took23.487seconds reading index for sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix3_1ng_1.raw... reading took23.531seconds reading index for sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix1_1ng_1.raw... reading took23.667seconds reading index for sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix3_1ng_1.raw... reading took25.955seconds reading index for sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix1_1ng_1.raw... reading took26.243seconds reading index for sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix2_1ng_1.raw... reading took26.24seconds reading index for sstreb_20230721_FIAplus_pos_15cm_BEHC18_blank_1.raw... reading took27.026seconds saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 302009, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "project", `_id` = 31230), created = "2024-04-03 15:17:22", createdby = "cpanse", description = "input files:\np32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix2_1ng_1.raw\np32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix1_1ng_1.raw\np32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix1_1ng_1.raw\np32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_blank_1.raw \np32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix3_1ng_1.raw\np32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_blank_1.raw \np32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_pos_15cm_BEHC18_mix2_1ng_1.raw\np32486/Metabolomics/QEXACTIVEHF_2/sstreb_20230721_FIAplus_pos_neg_mix1-3/sstreb_20230721_FIAplus_neg_15cm_BEHC18_mix3_1ng_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2406747), list(`_classname` = "resource", `_id` = 2406744)), modified = "2024-04-03 15:17:22", modifiedby = "cpanse", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2473723, container = list(`_classname` = "project", `_id` = 31230), created = "2024-04-03 15:17:22", createdby = "cpanse", filechecksum = "b1535dfa02f957f7dc8a30c39ec14dc6", junk = "false", modified = "2024-04-03 15:17:22", modifiedby = "cpanse", name = "WU302009-20240403-1517-rawDiag.pdf", relativepath = "container_31230/workunit_302009/WU302009-20240403-1517-rawDiag.pdf", size = "305715", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_31230/workunit_302009/WU302009-20240403-1517-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_31230/workunit_302009/WU302009-20240403-1517-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302009))) The current plot is available as workunit 302009. Rendering actionButton to link workunit 302009 in B-Fabric. saving 'login and webservicepassword' ... Execution halted