Listening on http://127.0.0.1:33849 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... plotTicBasepeak resourcesSelected: /srv/www/htdocs//p34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_003_S659062_Liposomes_Group_3.raw, /srv/www/htdocs//p34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_005_S659061_LPNP_Group_2.raw, /srv/www/htdocs//p34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_002_S659063_Control_Control.raw, /srv/www/htdocs//p34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_004_S659058_PLGA_Group_1.raw vals$rawfile: /srv/www/htdocs//p34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_003_S659062_Liposomes_Group_3.raw, /srv/www/htdocs//p34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_005_S659061_LPNP_Group_2.raw, /srv/www/htdocs//p34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_002_S659063_Control_Control.raw, /srv/www/htdocs//p34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_004_S659058_PLGA_Group_1.raw reading index for 20240404_C34746_004_S659058_PLGA_Group_1.raw... reading took77.614seconds reading index for 20240404_C34746_005_S659061_LPNP_Group_2.raw... reading took78.728seconds reading index for 20240404_C34746_002_S659063_Control_Control.raw... reading took79.133seconds reading index for 20240404_C34746_003_S659062_Liposomes_Group_3.raw... reading took80.484seconds saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 302097, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34746), created = "2024-04-05 15:23:40", createdby = "tobiasko", description = "input files:\np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_003_S659062_Liposomes_Group_3.raw\np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_005_S659061_LPNP_Group_2.raw \np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_002_S659063_Control_Control.raw \np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_004_S659058_PLGA_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2474050), list(`_classname` = "resource", `_id` = 2474049), list(`_classname` = "resource", `_id` = 2474048), list(`_classname` = "resource", `_id` = 2474047)), modified = "2024-04-05 15:23:40", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2474109, container = list(`_classname` = "order", `_id` = 34746), created = "2024-04-05 15:23:41", createdby = "tobiasko", filechecksum = "7704950f1ef867b87797c9cea2e6f969", junk = "false", modified = "2024-04-05 15:23:41", modifiedby = "tobiasko", name = "WU302097-20240405-1523-rawDiag.pdf", relativepath = "container_34746/workunit_302097/WU302097-20240405-1523-rawDiag.pdf", size = "57891", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34746/workunit_302097/WU302097-20240405-1523-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34746/workunit_302097/WU302097-20240405-1523-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302097))) The current plot is available as workunit 302097. Rendering actionButton to link workunit 302097 in B-Fabric. saving 'login and webservicepassword' ... plotLockMassCorrection Rendering actionButton to link workunit 302097 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 302098, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34746), created = "2024-04-05 15:23:58", createdby = "tobiasko", description = "input files:\np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_003_S659062_Liposomes_Group_3.raw\np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_005_S659061_LPNP_Group_2.raw \np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_002_S659063_Control_Control.raw \np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_004_S659058_PLGA_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2474050), list(`_classname` = "resource", `_id` = 2474049), list(`_classname` = "resource", `_id` = 2474048), list(`_classname` = "resource", `_id` = 2474047)), modified = "2024-04-05 15:23:58", modifiedby = "tobiasko", name = "plotLockMassCorrection", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2474110, container = list(`_classname` = "order", `_id` = 34746), created = "2024-04-05 15:23:58", createdby = "tobiasko", filechecksum = "9ac9cda780b105fee4b37b3aec00de7e", junk = "false", modified = "2024-04-05 15:23:58", modifiedby = "tobiasko", name = "WU302098-20240405-1523-rawDiag.pdf", relativepath = "container_34746/workunit_302098/WU302098-20240405-1523-rawDiag.pdf", size = "32288", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34746/workunit_302098/WU302098-20240405-1523-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34746/workunit_302098/WU302098-20240405-1523-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302098))) The current plot is available as workunit 302098. Rendering actionButton to link workunit 302098 in B-Fabric. plotInjectionTime Rendering actionButton to link workunit 302098 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 302099, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34746), created = "2024-04-05 15:24:28", createdby = "tobiasko", description = "input files:\np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_003_S659062_Liposomes_Group_3.raw\np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_005_S659061_LPNP_Group_2.raw \np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_002_S659063_Control_Control.raw \np34746/Proteomics/EXPLORIS_2/analytic_20240404/20240404_C34746_004_S659058_PLGA_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2474050), list(`_classname` = "resource", `_id` = 2474049), list(`_classname` = "resource", `_id` = 2474048), list(`_classname` = "resource", `_id` = 2474047)), modified = "2024-04-05 15:24:28", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2474111, container = list(`_classname` = "order", `_id` = 34746), created = "2024-04-05 15:24:28", createdby = "tobiasko", filechecksum = "a9459eb132a3639f7a79dd08000a16bd", junk = "false", modified = "2024-04-05 15:24:28", modifiedby = "tobiasko", name = "WU302099-20240405-1524-rawDiag.pdf", relativepath = "container_34746/workunit_302099/WU302099-20240405-1524-rawDiag.pdf", size = "492090", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34746/workunit_302099/WU302099-20240405-1524-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34746/workunit_302099/WU302099-20240405-1524-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302099))) The current plot is available as workunit 302099. Rendering actionButton to link workunit 302099 in B-Fabric. Execution halted