Listening on http://127.0.0.1:37023 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... plotTicBasepeak saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw vals$rawfile: /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw reading index for 20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw... reading took58.648seconds reading index for 20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw... reading took58.668seconds reading index for 20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw... reading took63.823seconds reading index for 20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw... reading took65.045seconds reading index for 20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw... reading took65.234seconds reading index for 20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw... reading took65.437seconds reading index for 20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw... reading took66.274seconds reading index for 20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw... reading took66.662seconds reading index for 20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw... reading took66.744seconds reading index for 20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw... reading took67.248seconds reading index for 20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw... reading took68.588seconds reading index for 20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw... reading took76.241seconds saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 302261, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:26:08", createdby = "tobiasko", description = "input files:\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2477368), list(`_classname` = "resource", `_id` = 2477367), list(`_classname` = "resource", `_id` = 2477366), list(`_classname` = "resource", `_id` = 2477365), list(`_classname` = "resource", `_id` = 2477364), list(`_classname` = "resource", `_id` = 2477363), list(`_classname` = "resource", `_id` = 2477362), list(`_classname` = "resource", `_id` = 2477361), list(`_classname` = "resource", `_id` = 2477360), list( `_classname` = "resource", `_id` = 2477359), list(`_classname` = "resource", `_id` = 2477358), list(`_classname` = "resource", `_id` = 2477357)), modified = "2024-04-11 09:26:08", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2477425, container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:26:08", createdby = "tobiasko", filechecksum = "51595ba5fd4094f7483857a74a38b0df", junk = "false", modified = "2024-04-11 09:26:08", modifiedby = "tobiasko", name = "WU302261-20240411-0926-rawDiag.pdf", relativepath = "container_34853/workunit_302261/WU302261-20240411-0926-rawDiag.pdf", size = "235772", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34853/workunit_302261/WU302261-20240411-0926-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34853/workunit_302261/WU302261-20240411-0926-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302261))) The current plot is available as workunit 302261. Rendering actionButton to link workunit 302261 in B-Fabric. saving 'login and webservicepassword' ... plotLockMassCorrection Rendering actionButton to link workunit 302261 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 302262, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:26:42", createdby = "tobiasko", description = "input files:\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2477368), list(`_classname` = "resource", `_id` = 2477367), list(`_classname` = "resource", `_id` = 2477366), list(`_classname` = "resource", `_id` = 2477365), list(`_classname` = "resource", `_id` = 2477364), list(`_classname` = "resource", `_id` = 2477363), list(`_classname` = "resource", `_id` = 2477362), list(`_classname` = "resource", `_id` = 2477361), list(`_classname` = "resource", `_id` = 2477360), list( `_classname` = "resource", `_id` = 2477359), list(`_classname` = "resource", `_id` = 2477358), list(`_classname` = "resource", `_id` = 2477357)), modified = "2024-04-11 09:26:42", modifiedby = "tobiasko", name = "plotLockMassCorrection", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2477426, container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:26:42", createdby = "tobiasko", filechecksum = "14dc00834bd83ffcff179152685f7d80", junk = "false", modified = "2024-04-11 09:26:42", modifiedby = "tobiasko", name = "WU302262-20240411-0926-rawDiag.pdf", relativepath = "container_34853/workunit_302262/WU302262-20240411-0926-rawDiag.pdf", size = "199991", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34853/workunit_302262/WU302262-20240411-0926-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34853/workunit_302262/WU302262-20240411-0926-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302262))) The current plot is available as workunit 302262. Rendering actionButton to link workunit 302262 in B-Fabric. plotPrecursorHeatmap Rendering actionButton to link workunit 302262 in B-Fabric. plotInjectionTime list(list(`_classname` = "workunit", `_id` = 302263, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:28:11", createdby = "tobiasko", description = "input files:\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2477368), list(`_classname` = "resource", `_id` = 2477367), list(`_classname` = "resource", `_id` = 2477366), list(`_classname` = "resource", `_id` = 2477365), list(`_classname` = "resource", `_id` = 2477364), list(`_classname` = "resource", `_id` = 2477363), list(`_classname` = "resource", `_id` = 2477362), list(`_classname` = "resource", `_id` = 2477361), list(`_classname` = "resource", `_id` = 2477360), list( `_classname` = "resource", `_id` = 2477359), list(`_classname` = "resource", `_id` = 2477358), list(`_classname` = "resource", `_id` = 2477357)), modified = "2024-04-11 09:28:11", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2477427, container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:28:12", createdby = "tobiasko", filechecksum = "ae8aecdd261aab8a570fac39bb041b5c", junk = "false", modified = "2024-04-11 09:28:12", modifiedby = "tobiasko", name = "WU302263-20240411-0928-rawDiag.pdf", relativepath = "container_34853/workunit_302263/WU302263-20240411-0928-rawDiag.pdf", size = "1584526", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34853/workunit_302263/WU302263-20240411-0928-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34853/workunit_302263/WU302263-20240411-0928-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302263))) The current plot is available as workunit 302263. Rendering actionButton to link workunit 302263 in B-Fabric. plotChargeState Rendering actionButton to link workunit 302263 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 302266, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:28:42", createdby = "tobiasko", description = "input files:\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2477368), list(`_classname` = "resource", `_id` = 2477367), list(`_classname` = "resource", `_id` = 2477366), list(`_classname` = "resource", `_id` = 2477365), list(`_classname` = "resource", `_id` = 2477364), list(`_classname` = "resource", `_id` = 2477363), list(`_classname` = "resource", `_id` = 2477362), list(`_classname` = "resource", `_id` = 2477361), list(`_classname` = "resource", `_id` = 2477360), list( `_classname` = "resource", `_id` = 2477359), list(`_classname` = "resource", `_id` = 2477358), list(`_classname` = "resource", `_id` = 2477357)), modified = "2024-04-11 09:28:42", modifiedby = "tobiasko", name = "plotChargeState", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2477431, container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:28:42", createdby = "tobiasko", filechecksum = "bc441810b39a1f17a2954ac02857ec7d", junk = "false", modified = "2024-04-11 09:28:42", modifiedby = "tobiasko", name = "WU302266-20240411-0928-rawDiag.pdf", relativepath = "container_34853/workunit_302266/WU302266-20240411-0928-rawDiag.pdf", size = "12541", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34853/workunit_302266/WU302266-20240411-0928-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34853/workunit_302266/WU302266-20240411-0928-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302266))) The current plot is available as workunit 302266. Rendering actionButton to link workunit 302266 in B-Fabric. `geom_smooth()` using formula = 'y ~ x' plotCycleLoad Rendering actionButton to link workunit 302266 in B-Fabric. `geom_smooth()` using formula = 'y ~ x' list(list(`_classname` = "workunit", `_id` = 302267, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:30:01", createdby = "tobiasko", description = "input files:\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2477368), list(`_classname` = "resource", `_id` = 2477367), list(`_classname` = "resource", `_id` = 2477366), list(`_classname` = "resource", `_id` = 2477365), list(`_classname` = "resource", `_id` = 2477364), list(`_classname` = "resource", `_id` = 2477363), list(`_classname` = "resource", `_id` = 2477362), list(`_classname` = "resource", `_id` = 2477361), list(`_classname` = "resource", `_id` = 2477360), list( `_classname` = "resource", `_id` = 2477359), list(`_classname` = "resource", `_id` = 2477358), list(`_classname` = "resource", `_id` = 2477357)), modified = "2024-04-11 09:30:01", modifiedby = "tobiasko", name = "plotCycleLoad", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2477435, container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:30:02", createdby = "tobiasko", filechecksum = "3c426ffef050108f0d24c2989398cd07", junk = "false", modified = "2024-04-11 09:30:02", modifiedby = "tobiasko", name = "WU302267-20240411-0930-rawDiag.pdf", relativepath = "container_34853/workunit_302267/WU302267-20240411-0930-rawDiag.pdf", size = "1148164", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34853/workunit_302267/WU302267-20240411-0930-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34853/workunit_302267/WU302267-20240411-0930-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302267))) The current plot is available as workunit 302267. Rendering actionButton to link workunit 302267 in B-Fabric. plotCycleTime Rendering actionButton to link workunit 302267 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 302268, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:31:15", createdby = "tobiasko", description = "input files:\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2477368), list(`_classname` = "resource", `_id` = 2477367), list(`_classname` = "resource", `_id` = 2477366), list(`_classname` = "resource", `_id` = 2477365), list(`_classname` = "resource", `_id` = 2477364), list(`_classname` = "resource", `_id` = 2477363), list(`_classname` = "resource", `_id` = 2477362), list(`_classname` = "resource", `_id` = 2477361), list(`_classname` = "resource", `_id` = 2477360), list( `_classname` = "resource", `_id` = 2477359), list(`_classname` = "resource", `_id` = 2477358), list(`_classname` = "resource", `_id` = 2477357)), modified = "2024-04-11 09:31:15", modifiedby = "tobiasko", name = "plotCycleTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2477436, container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:31:15", createdby = "tobiasko", filechecksum = "56923c51d2c5f4c96ab82bc8f97b5c53", junk = "false", modified = "2024-04-11 09:31:15", modifiedby = "tobiasko", name = "WU302268-20240411-0931-rawDiag.pdf", relativepath = "container_34853/workunit_302268/WU302268-20240411-0931-rawDiag.pdf", size = "214052", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34853/workunit_302268/WU302268-20240411-0931-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34853/workunit_302268/WU302268-20240411-0931-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302268))) The current plot is available as workunit 302268. Rendering actionButton to link workunit 302268 in B-Fabric. Rendering actionButton to link workunit 302268 in B-Fabric. plotTicBasepeak list(list(`_classname` = "workunit", `_id` = 302269, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:32:15", createdby = "tobiasko", description = "input files:\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw\np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw \np34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2477368), list(`_classname` = "resource", `_id` = 2477367), list(`_classname` = "resource", `_id` = 2477366), list(`_classname` = "resource", `_id` = 2477365), list(`_classname` = "resource", `_id` = 2477364), list(`_classname` = "resource", `_id` = 2477363), list(`_classname` = "resource", `_id` = 2477362), list(`_classname` = "resource", `_id` = 2477361), list(`_classname` = "resource", `_id` = 2477360), list( `_classname` = "resource", `_id` = 2477359), list(`_classname` = "resource", `_id` = 2477358), list(`_classname` = "resource", `_id` = 2477357)), modified = "2024-04-11 09:32:15", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2477437, container = list(`_classname` = "order", `_id` = 34853), created = "2024-04-11 09:32:15", createdby = "tobiasko", filechecksum = "10739a6e73f773a046534c91da06991c", junk = "false", modified = "2024-04-11 09:32:15", modifiedby = "tobiasko", name = "WU302269-20240411-0932-rawDiag.pdf", relativepath = "container_34853/workunit_302269/WU302269-20240411-0932-rawDiag.pdf", size = "355250", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34853/workunit_302269/WU302269-20240411-0932-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34853/workunit_302269/WU302269-20240411-0932-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302269))) The current plot is available as workunit 302269. Rendering actionButton to link workunit 302269 in B-Fabric. Rendering actionButton to link workunit 302269 in B-Fabric. plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw vals$rawfile: /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw, /srv/www/htdocs//p34853/Proteomics/EXPLORIS_1/tobiasko_20240409_ubiProbes/20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw reading index for 20240409_005_S666088_UbV10_2_acyl_2_Group_4.raw... reading took58.296seconds reading index for 20240409_013_S666082_UbV7_1_alkyne_2_Group_1.raw... reading took58.911seconds reading index for 20240409_011_S666092_UbV15_D_acyl_2_Group_6.raw... reading took61.713seconds reading index for 20240409_007_S666087_UbV10_2_acyl_1_Group_4.raw... reading took62.45seconds reading index for 20240409_014_S666085_UbV10_2_alkyne1_Group_3.raw... reading took62.637seconds reading index for 20240409_012_S666089_UbV15_D_alkyne_1_Group_5.raw... reading took62.727seconds reading index for 20240409_009_S666084_UbV7_1_acyl_2_Group_2.raw... reading took62.775seconds reading index for 20240409_002_S665688_UbV7_1_alkyne_1_Group_1.raw... reading took63.673seconds reading index for 20240409_004_S666091_UbV15_D_acyl_1_Group_6.raw... reading took64.996seconds reading index for 20240409_010_S666090_UbV15_D_alkyne_2_Group_5.raw... reading took66.248seconds reading index for 20240409_003_S666083_UbV7_1_acyl_1_Group_2.raw... reading took70.754seconds reading index for 20240409_006_S666086_UbV10_2_alkyne2_Group_3.raw... reading took80.769seconds Execution halted