Listening on http://127.0.0.1:43451 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. resourcesSelected: /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_002r_S664485_SOH-051_poscntrl_HC1_Group_1.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_008_S664488_SOH-051_poscntrl_LC2_Group_2.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_004_S664492_SOH-051_negcntrl_LC2_Group_4.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_005_S664490_SOH-051_negcntrl_HC2_Group_3.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_009_S664486_SOH-051_poscntrl_HC2_Group_1.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_011_S664491_SOH-051_negcntrl_LC1_Group_4.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_003r_S664487_SOH-051_poscntrl_LC1_Group_2.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_010_S664489_SOH-051_negcntrl_HC1_Group_3.raw vals$rawfile: /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_002r_S664485_SOH-051_poscntrl_HC1_Group_1.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_008_S664488_SOH-051_poscntrl_LC2_Group_2.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_004_S664492_SOH-051_negcntrl_LC2_Group_4.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_005_S664490_SOH-051_negcntrl_HC2_Group_3.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_009_S664486_SOH-051_poscntrl_HC2_Group_1.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_011_S664491_SOH-051_negcntrl_LC1_Group_4.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_003r_S664487_SOH-051_poscntrl_LC1_Group_2.raw, /srv/www/htdocs//p34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_010_S664489_SOH-051_negcntrl_HC1_Group_3.raw reading index for 20240409_C34836_004_S664492_SOH-051_negcntrl_LC2_Group_4.raw... reading took112.062seconds reading index for 20240409_C34836_011_S664491_SOH-051_negcntrl_LC1_Group_4.raw... reading took113.48seconds reading index for 20240409_C34836_009_S664486_SOH-051_poscntrl_HC2_Group_1.raw... reading took113.905seconds reading index for 20240409_C34836_002r_S664485_SOH-051_poscntrl_HC1_Group_1.raw... reading took113.977seconds reading index for 20240409_C34836_003r_S664487_SOH-051_poscntrl_LC1_Group_2.raw... reading took115.752seconds reading index for 20240409_C34836_008_S664488_SOH-051_poscntrl_LC2_Group_2.raw... reading took116.968seconds reading index for 20240409_C34836_010_S664489_SOH-051_negcntrl_HC1_Group_3.raw... reading took119.183seconds reading index for 20240409_C34836_005_S664490_SOH-051_negcntrl_HC2_Group_3.raw... reading took119.704seconds Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. list(list(`_classname` = "workunit", `_id` = 302301, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34836), created = "2024-04-11 14:52:21", createdby = "tobiasko", description = "input files:\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_002r_S664485_SOH-051_poscntrl_HC1_Group_1.raw\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_008_S664488_SOH-051_poscntrl_LC2_Group_2.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_004_S664492_SOH-051_negcntrl_LC2_Group_4.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_005_S664490_SOH-051_negcntrl_HC2_Group_3.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_009_S664486_SOH-051_poscntrl_HC2_Group_1.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_011_S664491_SOH-051_negcntrl_LC1_Group_4.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_003r_S664487_SOH-051_poscntrl_LC1_Group_2.raw\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_010_S664489_SOH-051_negcntrl_HC1_Group_3.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2476045), list(`_classname` = "resource", `_id` = 2476044), list(`_classname` = "resource", `_id` = 2476043), list(`_classname` = "resource", `_id` = 2476042), list(`_classname` = "resource", `_id` = 2476041), list(`_classname` = "resource", `_id` = 2476040), list(`_classname` = "resource", `_id` = 2476039), list(`_classname` = "resource", `_id` = 2476038)), modified = "2024-04-11 14:52:21", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2477528, container = list(`_classname` = "order", `_id` = 34836), created = "2024-04-11 14:52:22", createdby = "tobiasko", filechecksum = "b8b873a8724a5123cb3a7a720b4dced6", junk = "false", modified = "2024-04-11 14:52:22", modifiedby = "tobiasko", name = "WU302301-20240411-1452-rawDiag.pdf", relativepath = "container_34836/workunit_302301/WU302301-20240411-1452-rawDiag.pdf", size = "99604", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34836/workunit_302301/WU302301-20240411-1452-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34836/workunit_302301/WU302301-20240411-1452-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302301))) The current plot is available as workunit 302301. Rendering actionButton to link workunit 302301 in B-Fabric. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. plotLockMassCorrection Rendering actionButton to link workunit 302301 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 302302, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34836), created = "2024-04-11 14:52:48", createdby = "tobiasko", description = "input files:\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_002r_S664485_SOH-051_poscntrl_HC1_Group_1.raw\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_008_S664488_SOH-051_poscntrl_LC2_Group_2.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_004_S664492_SOH-051_negcntrl_LC2_Group_4.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_005_S664490_SOH-051_negcntrl_HC2_Group_3.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_009_S664486_SOH-051_poscntrl_HC2_Group_1.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_011_S664491_SOH-051_negcntrl_LC1_Group_4.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_003r_S664487_SOH-051_poscntrl_LC1_Group_2.raw\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_010_S664489_SOH-051_negcntrl_HC1_Group_3.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2476045), list(`_classname` = "resource", `_id` = 2476044), list(`_classname` = "resource", `_id` = 2476043), list(`_classname` = "resource", `_id` = 2476042), list(`_classname` = "resource", `_id` = 2476041), list(`_classname` = "resource", `_id` = 2476040), list(`_classname` = "resource", `_id` = 2476039), list(`_classname` = "resource", `_id` = 2476038)), modified = "2024-04-11 14:52:48", modifiedby = "tobiasko", name = "plotLockMassCorrection", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2477529, container = list(`_classname` = "order", `_id` = 34836), created = "2024-04-11 14:52:48", createdby = "tobiasko", filechecksum = "09f79510dcd5bca33474a6ce8b302be5", junk = "false", modified = "2024-04-11 14:52:48", modifiedby = "tobiasko", name = "WU302302-20240411-1452-rawDiag.pdf", relativepath = "container_34836/workunit_302302/WU302302-20240411-1452-rawDiag.pdf", size = "61080", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34836/workunit_302302/WU302302-20240411-1452-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34836/workunit_302302/WU302302-20240411-1452-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302302))) The current plot is available as workunit 302302. Rendering actionButton to link workunit 302302 in B-Fabric. plotInjectionTime Rendering actionButton to link workunit 302302 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 302303, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34836), created = "2024-04-11 14:53:28", createdby = "tobiasko", description = "input files:\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_002r_S664485_SOH-051_poscntrl_HC1_Group_1.raw\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_008_S664488_SOH-051_poscntrl_LC2_Group_2.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_004_S664492_SOH-051_negcntrl_LC2_Group_4.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_005_S664490_SOH-051_negcntrl_HC2_Group_3.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_009_S664486_SOH-051_poscntrl_HC2_Group_1.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_011_S664491_SOH-051_negcntrl_LC1_Group_4.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_003r_S664487_SOH-051_poscntrl_LC1_Group_2.raw\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_010_S664489_SOH-051_negcntrl_HC1_Group_3.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2476045), list(`_classname` = "resource", `_id` = 2476044), list(`_classname` = "resource", `_id` = 2476043), list(`_classname` = "resource", `_id` = 2476042), list(`_classname` = "resource", `_id` = 2476041), list(`_classname` = "resource", `_id` = 2476040), list(`_classname` = "resource", `_id` = 2476039), list(`_classname` = "resource", `_id` = 2476038)), modified = "2024-04-11 14:53:28", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2477530, container = list(`_classname` = "order", `_id` = 34836), created = "2024-04-11 14:53:29", createdby = "tobiasko", filechecksum = "a36c8158830e340ce834a5b9790a8e93", junk = "false", modified = "2024-04-11 14:53:29", modifiedby = "tobiasko", name = "WU302303-20240411-1453-rawDiag.pdf", relativepath = "container_34836/workunit_302303/WU302303-20240411-1453-rawDiag.pdf", size = "849458", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34836/workunit_302303/WU302303-20240411-1453-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34836/workunit_302303/WU302303-20240411-1453-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302303))) The current plot is available as workunit 302303. Rendering actionButton to link workunit 302303 in B-Fabric. Rendering actionButton to link workunit 302303 in B-Fabric. plotTicBasepeak list(list(`_classname` = "workunit", `_id` = 302304, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34836), created = "2024-04-11 14:54:14", createdby = "tobiasko", description = "input files:\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_002r_S664485_SOH-051_poscntrl_HC1_Group_1.raw\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_008_S664488_SOH-051_poscntrl_LC2_Group_2.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_004_S664492_SOH-051_negcntrl_LC2_Group_4.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_005_S664490_SOH-051_negcntrl_HC2_Group_3.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_009_S664486_SOH-051_poscntrl_HC2_Group_1.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_011_S664491_SOH-051_negcntrl_LC1_Group_4.raw \np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_003r_S664487_SOH-051_poscntrl_LC1_Group_2.raw\np34836/Proteomics/EXPLORIS_2/analytic_20240409/20240409_C34836_010_S664489_SOH-051_negcntrl_HC1_Group_3.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2476045), list(`_classname` = "resource", `_id` = 2476044), list(`_classname` = "resource", `_id` = 2476043), list(`_classname` = "resource", `_id` = 2476042), list(`_classname` = "resource", `_id` = 2476041), list(`_classname` = "resource", `_id` = 2476040), list(`_classname` = "resource", `_id` = 2476039), list(`_classname` = "resource", `_id` = 2476038)), modified = "2024-04-11 14:54:14", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2477531, container = list(`_classname` = "order", `_id` = 34836), created = "2024-04-11 14:54:15", createdby = "tobiasko", filechecksum = "5a6316a92f2e93ba3058d2e7104a7c8e", junk = "false", modified = "2024-04-11 14:54:15", modifiedby = "tobiasko", name = "WU302304-20240411-1454-rawDiag.pdf", relativepath = "container_34836/workunit_302304/WU302304-20240411-1454-rawDiag.pdf", size = "117751", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34836/workunit_302304/WU302304-20240411-1454-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34836/workunit_302304/WU302304-20240411-1454-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302304))) The current plot is available as workunit 302304. Rendering actionButton to link workunit 302304 in B-Fabric. Rendering actionButton to link workunit 302304 in B-Fabric. Execution halted