Listening on http://127.0.0.1:44375
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p31230/Metabolomics/EXPLORIS_3/sschauer_20240310_test_SRM_3NPH-SMCFAs/blank_3.raw, /srv/www/htdocs//p31230/Metabolomics/EXPLORIS_3/sschauer_20240310_test_SRM_3NPH-SMCFAs/QC_3NPH-SCFAs_1000nM.raw
vals$rawfile: /srv/www/htdocs//p31230/Metabolomics/EXPLORIS_3/sschauer_20240310_test_SRM_3NPH-SMCFAs/blank_3.raw,
	/srv/www/htdocs//p31230/Metabolomics/EXPLORIS_3/sschauer_20240310_test_SRM_3NPH-SMCFAs/QC_3NPH-SCFAs_1000nM.raw
reading index for blank_3.raw...

reading index for QC_3NPH-SCFAs_1000nM.raw...

Warning: Error in : BiocParallel errors
  2 remote errors, element index: 1, 2
  0 unevaluated and other errors
  first remote error:
Error in read.table(file = file, header = header, sep = sep, quote = quote, : no lines available in input

  199: <Anonymous>
  198: stop
  197: .bpinit
  196: bplapply
  194: BiocParallel::bplapply
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
resourcesSelected: /srv/www/htdocs//p31230/Metabolomics/EXPLORIS_3/sschauer_20240308_QC_3NPH-SCFAs_BEH_C18_2point1_50mm_column_with__VaHoBiDuo/QC_3NPH-SCFAs_100uM_1.raw
vals$rawfile: /srv/www/htdocs//p31230/Metabolomics/EXPLORIS_3/sschauer_20240308_QC_3NPH-SCFAs_BEH_C18_2point1_50mm_column_with__VaHoBiDuo/QC_3NPH-SCFAs_100uM_1.raw
reading index for QC_3NPH-SCFAs_100uM_1.raw...

Warning: Error in : BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in read.table(file = file, header = header, sep = sep, quote = quote, : no lines available in input

  199: <Anonymous>
  198: stop
  197: .bpinit
  196: bplapply
  194: BiocParallel::bplapply
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
resourcesSelected: /srv/www/htdocs//p32312/Proteomics/EXPLORIS_2/analytic_20230725_dia/20230725_C32312_008_autoQC4L.raw
vals$rawfile: /srv/www/htdocs//p32312/Proteomics/EXPLORIS_2/analytic_20230725_dia/20230725_C32312_008_autoQC4L.raw
reading index for 20230725_C32312_008_autoQC4L.raw...
reading took70.57seconds

`geom_smooth()` using formula = 'y ~ x'
plotCycleLoad
plotLockMassCorrection
saving 'login and webservicepassword' ...


Execution halted