Listening on http://127.0.0.1:43895
Warning: Error in <Anonymous>: No handler registered for type bfabric13-store:shinyStore
  1: runApp
Error in (function (name, val, shinysession)  : 
  No handler registered for type bfabric13-store:shinyStore
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated_rep.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_017_S664029_EGFP-1_cont_vehicle.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_007_S664026_EGFP-1_H2O2_Control.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_003_S664020_Kif3A-1_H2O2_Treated.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_006_S664028_EGFP-3_H2O2_Control.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_017_S664029_EGFP-1_cont_vehicle_rep.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_007_S664026_EGFP-1_H2O2_Control_rep.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_004_S664024_Kif3A-2_cont_Untreated.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_011_S664031_EGFP-3_cont_vehicle.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_012_S664030_EGFP-2_cont_vehicle.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_015_S664023_Kif3A-1_cont_Untreated.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated_rep.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_002_S664027_EGFP-2_H2O2_Control.raw, /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_008_S664025_Kif3A-3_cont_Untreated.raw
vals$rawfile: /srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated_rep.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_017_S664029_EGFP-1_cont_vehicle.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_007_S664026_EGFP-1_H2O2_Control.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_003_S664020_Kif3A-1_H2O2_Treated.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_006_S664028_EGFP-3_H2O2_Control.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_017_S664029_EGFP-1_cont_vehicle_rep.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_007_S664026_EGFP-1_H2O2_Control_rep.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_004_S664024_Kif3A-2_cont_Untreated.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_011_S664031_EGFP-3_cont_vehicle.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_012_S664030_EGFP-2_cont_vehicle.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_015_S664023_Kif3A-1_cont_Untreated.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated_rep.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_002_S664027_EGFP-2_H2O2_Control.raw,
	/srv/www/htdocs//p34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_008_S664025_Kif3A-3_cont_Untreated.raw
reading index for 20240417_C34831_017_S664029_EGFP-1_cont_vehicle.raw...
reading took78.763seconds

reading index for 20240417_C34831_007_S664026_EGFP-1_H2O2_Control_rep.raw...
reading took80.346seconds

reading index for 20240417_C34831_017_S664029_EGFP-1_cont_vehicle_rep.raw...
reading took80.748seconds

reading index for 20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated_rep.raw...
reading took81.464seconds

reading index for 20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated.raw...
reading took81.845seconds

reading index for 20240417_C34831_004_S664024_Kif3A-2_cont_Untreated.raw...
reading took83.006seconds

reading index for 20240417_C34831_011_S664031_EGFP-3_cont_vehicle.raw...
reading took83.233seconds

reading index for 20240417_C34831_007_S664026_EGFP-1_H2O2_Control.raw...
reading took83.278seconds

reading index for 20240417_C34831_008_S664025_Kif3A-3_cont_Untreated.raw...
reading took83.229seconds

reading index for 20240417_C34831_006_S664028_EGFP-3_H2O2_Control.raw...
reading took83.488seconds

reading index for 20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated_rep.raw...
reading took83.698seconds

reading index for 20240417_C34831_012_S664030_EGFP-2_cont_vehicle.raw...
reading took83.83seconds

reading index for 20240417_C34831_002_S664027_EGFP-2_H2O2_Control.raw...
reading took84.153seconds

reading index for 20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated.raw...
reading took84.306seconds

reading index for 20240417_C34831_015_S664023_Kif3A-1_cont_Untreated.raw...
reading took84.577seconds

reading index for 20240417_C34831_003_S664020_Kif3A-1_H2O2_Treated.raw...
reading took85.144seconds

plotTicBasepeak
saving 'login and webservicepassword' ...
list(list(`_classname` = "workunit", `_id` = 302616, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34831), created = "2024-04-22 16:52:40", createdby = "tobiasko", description = "input files:\np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated_rep.raw\np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_017_S664029_EGFP-1_cont_vehicle.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_007_S664026_EGFP-1_H2O2_Control.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_003_S664020_Kif3A-1_H2O2_Treated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_006_S664028_EGFP-3_H2O2_Control.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_017_S664029_EGFP-1_cont_vehicle_rep.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_007_S664026_EGFP-1_H2O2_Control_rep.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_004_S664024_Kif3A-2_cont_Untreated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_011_S664031_EGFP-3_cont_vehicle.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_012_S664030_EGFP-2_cont_vehicle.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_015_S664023_Kif3A-1_cont_Untreated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated_rep.raw\np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_002_S664027_EGFP-2_H2O2_Control.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_008_S664025_Kif3A-3_cont_Untreated.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2485755), list(`_classname` = "resource", `_id` = 2485754), list(`_classname` = "resource", `_id` = 2485753), list(`_classname` = "resource", `_id` = 2485752), list(`_classname` = "resource", `_id` = 2485751), list(`_classname` = "resource", `_id` = 2485750), list(`_classname` = "resource", `_id` = 2485749), list(`_classname` = "resource", `_id` = 2485748), list(`_classname` = "resource", `_id` = 2485747), list(
        `_classname` = "resource", `_id` = 2485746), list(`_classname` = "resource", `_id` = 2485745), list(`_classname` = "resource", `_id` = 2485744), list(`_classname` = "resource", `_id` = 2485743), list(`_classname` = "resource", `_id` = 2485742), list(`_classname` = "resource", `_id` = 2485741), list(`_classname` = "resource", `_id` = 2485740)), modified = "2024-04-22 16:52:40", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2486050, container = list(`_classname` = "order", `_id` = 34831), created = "2024-04-22 16:52:41", createdby = "tobiasko", filechecksum = "ee3174632cd4673c22848cd0ea327009", junk = "false", modified = "2024-04-22 16:52:41", modifiedby = "tobiasko", name = "WU302616-20240422-1652-rawDiag.pdf", relativepath = "container_34831/workunit_302616/WU302616-20240422-1652-rawDiag.pdf", size = "135905", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34831/workunit_302616/WU302616-20240422-1652-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34831/workunit_302616/WU302616-20240422-1652-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302616)))
The current plot is available as workunit 302616.
Rendering actionButton to link workunit 302616 in B-Fabric.
saving 'login and webservicepassword' ...
plotLockMassCorrection
Rendering actionButton to link workunit 302616 in B-Fabric.
list(list(`_classname` = "workunit", `_id` = 302617, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34831), created = "2024-04-22 16:53:07", createdby = "tobiasko", description = "input files:\np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated_rep.raw\np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_017_S664029_EGFP-1_cont_vehicle.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_007_S664026_EGFP-1_H2O2_Control.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_003_S664020_Kif3A-1_H2O2_Treated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_006_S664028_EGFP-3_H2O2_Control.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_017_S664029_EGFP-1_cont_vehicle_rep.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_007_S664026_EGFP-1_H2O2_Control_rep.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_004_S664024_Kif3A-2_cont_Untreated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_011_S664031_EGFP-3_cont_vehicle.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_012_S664030_EGFP-2_cont_vehicle.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_015_S664023_Kif3A-1_cont_Untreated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated_rep.raw\np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_002_S664027_EGFP-2_H2O2_Control.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_008_S664025_Kif3A-3_cont_Untreated.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2485755), list(`_classname` = "resource", `_id` = 2485754), list(`_classname` = "resource", `_id` = 2485753), list(`_classname` = "resource", `_id` = 2485752), list(`_classname` = "resource", `_id` = 2485751), list(`_classname` = "resource", `_id` = 2485750), list(`_classname` = "resource", `_id` = 2485749), list(`_classname` = "resource", `_id` = 2485748), list(`_classname` = "resource", `_id` = 2485747), list(
        `_classname` = "resource", `_id` = 2485746), list(`_classname` = "resource", `_id` = 2485745), list(`_classname` = "resource", `_id` = 2485744), list(`_classname` = "resource", `_id` = 2485743), list(`_classname` = "resource", `_id` = 2485742), list(`_classname` = "resource", `_id` = 2485741), list(`_classname` = "resource", `_id` = 2485740)), modified = "2024-04-22 16:53:07", modifiedby = "tobiasko", name = "plotLockMassCorrection", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2486051, container = list(`_classname` = "order", `_id` = 34831), created = "2024-04-22 16:53:08", createdby = "tobiasko", filechecksum = "dc5d17a647393ae525d8602dee7c5139", junk = "false", modified = "2024-04-22 16:53:08", modifiedby = "tobiasko", name = "WU302617-20240422-1653-rawDiag.pdf", relativepath = "container_34831/workunit_302617/WU302617-20240422-1653-rawDiag.pdf", size = "107918", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34831/workunit_302617/WU302617-20240422-1653-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34831/workunit_302617/WU302617-20240422-1653-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 302617)))
The current plot is available as workunit 302617.
Rendering actionButton to link workunit 302617 in B-Fabric.
Warning: Computation failed in `stat_smooth()`
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
plotInjectionTime
Rendering actionButton to link workunit 302617 in B-Fabric.
Warning: Computation failed in `stat_smooth()`
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
list(list(`_classname` = "workunit", `_id` = 302618, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34831), created = "2024-04-22 16:55:57", createdby = "tobiasko", description = "input files:\np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated_rep.raw\np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_017_S664029_EGFP-1_cont_vehicle.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_007_S664026_EGFP-1_H2O2_Control.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_003_S664020_Kif3A-1_H2O2_Treated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_006_S664028_EGFP-3_H2O2_Control.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_017_S664029_EGFP-1_cont_vehicle_rep.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_007_S664026_EGFP-1_H2O2_Control_rep.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_004_S664024_Kif3A-2_cont_Untreated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_011_S664031_EGFP-3_cont_vehicle.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_012_S664030_EGFP-2_cont_vehicle.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_015_S664023_Kif3A-1_cont_Untreated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_013_S664021_Kif3A-2_H2O2_Treated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated_rep.raw\np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_016_S664022_Kif3A-3_H2O2_Treated.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_002_S664027_EGFP-2_H2O2_Control.raw \np34831/Proteomics/EXPLORIS_2/analytic_20240417/20240417_C34831_008_S664025_Kif3A-3_cont_Untreated.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2485755), list(`_classname` = "resource", `_id` = 2485754), list(`_classname` = "resource", `_id` = 2485753), list(`_classname` = "resource", `_id` = 2485752), list(`_classname` = "resource", `_id` = 2485751), list(`_classname` = "resource", `_id` = 2485750), list(`_classname` = "resource", `_id` = 2485749), list(`_classname` = "resource", `_id` = 2485748), list(`_classname` = "resource", `_id` = 2485747), list(
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The current plot is available as workunit 302618.
Rendering actionButton to link workunit 302618 in B-Fabric.
plotPrecursorHeatmap
Rendering actionButton to link workunit 302618 in B-Fabric.


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