Listening on http://127.0.0.1:36417
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
resourcesSelected: /srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_006_S681224_INTS6L_1_Group_1.raw, /srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_003_S681222_GFP_2_Control.raw, /srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_002_S681221_GFP_1_Control.raw, /srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_007_S681225_INTS6L_2_Group_2.raw, /srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_008_S681226_INTS6L_3_Group_3.raw, /srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_004_S681223_GFP_3_Control.raw
vals$rawfile: /srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_006_S681224_INTS6L_1_Group_1.raw,
	/srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_003_S681222_GFP_2_Control.raw,
	/srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_002_S681221_GFP_1_Control.raw,
	/srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_007_S681225_INTS6L_2_Group_2.raw,
	/srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_008_S681226_INTS6L_3_Group_3.raw,
	/srv/www/htdocs//p35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_004_S681223_GFP_3_Control.raw
reading index for 20240430_C35011_002_S681221_GFP_1_Control.raw...

reading index for 20240430_C35011_003_S681222_GFP_2_Control.raw...

reading index for 20240430_C35011_006_S681224_INTS6L_1_Group_1.raw...

reading index for 20240430_C35011_004_S681223_GFP_3_Control.raw...

reading index for 20240430_C35011_007_S681225_INTS6L_2_Group_2.raw...

reading index for 20240430_C35011_008_S681226_INTS6L_3_Group_3.raw...

plotTicBasepeak
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
list(list(`_classname` = "workunit", `_id` = 303003, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35011), created = "2024-05-02 09:29:34", createdby = "heinzmann", description = "input files:\np35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_006_S681224_INTS6L_1_Group_1.raw\np35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_003_S681222_GFP_2_Control.raw \np35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_002_S681221_GFP_1_Control.raw \np35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_007_S681225_INTS6L_2_Group_2.raw\np35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_008_S681226_INTS6L_3_Group_3.raw\np35011/Proteomics/EXPLORIS_2/analytic_20240430/20240430_C35011_004_S681223_GFP_3_Control.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2492445), list(`_classname` = "resource", `_id` = 2492444), list(`_classname` = "resource", `_id` = 2492443), list(`_classname` = "resource", `_id` = 2492442), list(`_classname` = "resource", `_id` = 2492441), list(`_classname` = "resource", `_id` = 2492440)), modified = "2024-05-02 09:29:34", modifiedby = "heinzmann", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2492480, container = list(`_classname` = "order", `_id` = 35011), created = "2024-05-02 09:29:34", createdby = "heinzmann", filechecksum = "555c4792ebcc479209272a542198d9b3", junk = "false", modified = "2024-05-02 09:29:34", modifiedby = "heinzmann", name = "WU303003-20240502-0929-rawDiag.pdf", relativepath = "container_35011/workunit_303003/WU303003-20240502-0929-rawDiag.pdf", size = "180775", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35011/workunit_303003/WU303003-20240502-0929-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35011/workunit_303003/WU303003-20240502-0929-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303003)))
The current plot is available as workunit 303003.
Rendering actionButton to link workunit 303003 in B-Fabric.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
plotPrecursorHeatmap
Rendering actionButton to link workunit 303003 in B-Fabric.
plotChargeState