Listening on http://127.0.0.1:42243 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw vals$rawfile: /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw reading index for 20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw... reading index for 20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw... reading index for 20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw... reading index for 20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw... plotTicBasepeak resourcesSelected: /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw vals$rawfile: /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw Warning: Error in +: non-numeric argument to binary operator 1: runApp plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw vals$rawfile: /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw, /srv/www/htdocs//p35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw reading index for 20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw... reading index for 20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw... reading index for 20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw... reading index for 20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw... saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 303156, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35085), created = "2024-05-07 10:09:16", createdby = "tobiasko", description = "input files:\np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw\np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw \np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw \np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2494676), list(`_classname` = "resource", `_id` = 2494675), list(`_classname` = "resource", `_id` = 2494674), list(`_classname` = "resource", `_id` = 2494673)), modified = "2024-05-07 10:09:16", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2495342, container = list(`_classname` = "order", `_id` = 35085), created = "2024-05-07 10:09:16", createdby = "tobiasko", filechecksum = "37dc3268e31d9af6baafa4e776b9c6ff", junk = "false", modified = "2024-05-07 10:09:16", modifiedby = "tobiasko", name = "WU303156-20240507-1009-rawDiag.pdf", relativepath = "container_35085/workunit_303156/WU303156-20240507-1009-rawDiag.pdf", size = "54937", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35085/workunit_303156/WU303156-20240507-1009-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35085/workunit_303156/WU303156-20240507-1009-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303156))) The current plot is available as workunit 303156. Rendering actionButton to link workunit 303156 in B-Fabric. saving 'login and webservicepassword' ... plotLockMassCorrection list(list(`_classname` = "workunit", `_id` = 303157, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35085), created = "2024-05-07 10:09:32", createdby = "tobiasko", description = "input files:\np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw\np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw \np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw \np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2494676), list(`_classname` = "resource", `_id` = 2494675), list(`_classname` = "resource", `_id` = 2494674), list(`_classname` = "resource", `_id` = 2494673)), modified = "2024-05-07 10:09:32", modifiedby = "tobiasko", name = "plotLockMassCorrection", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2495343, container = list(`_classname` = "order", `_id` = 35085), created = "2024-05-07 10:09:32", createdby = "tobiasko", filechecksum = "ceae2693501ab72954b6b3003d5abc3d", junk = "false", modified = "2024-05-07 10:09:32", modifiedby = "tobiasko", name = "WU303157-20240507-1009-rawDiag.pdf", relativepath = "container_35085/workunit_303157/WU303157-20240507-1009-rawDiag.pdf", size = "33673", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35085/workunit_303157/WU303157-20240507-1009-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35085/workunit_303157/WU303157-20240507-1009-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303157))) The current plot is available as workunit 303157. Rendering actionButton to link workunit 303157 in B-Fabric. plotInjectionTime list(list(`_classname` = "workunit", `_id` = 303158, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35085), created = "2024-05-07 10:10:04", createdby = "tobiasko", description = "input files:\np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw\np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw \np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw \np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2494676), list(`_classname` = "resource", `_id` = 2494675), list(`_classname` = "resource", `_id` = 2494674), list(`_classname` = "resource", `_id` = 2494673)), modified = "2024-05-07 10:10:04", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2495344, container = list(`_classname` = "order", `_id` = 35085), created = "2024-05-07 10:10:04", createdby = "tobiasko", filechecksum = "9852b55da2926c1ddd1e2a9804aff980", junk = "false", modified = "2024-05-07 10:10:04", modifiedby = "tobiasko", name = "WU303158-20240507-1010-rawDiag.pdf", relativepath = "container_35085/workunit_303158/WU303158-20240507-1010-rawDiag.pdf", size = "446210", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35085/workunit_303158/WU303158-20240507-1010-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35085/workunit_303158/WU303158-20240507-1010-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303158))) The current plot is available as workunit 303158. Rendering actionButton to link workunit 303158 in B-Fabric. plotPrecursorHeatmap list(list(`_classname` = "workunit", `_id` = 303159, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35085), created = "2024-05-07 10:10:27", createdby = "tobiasko", description = "input files:\np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_003_S684281_NoBiotinEluted_Group_2.raw\np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_006_S684283_EdUUNTEluted_Group_4.raw \np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_005_S684282_EdUUNTOBD_Group_3.raw \np35085/Proteomics/EXPLORIS_2/analytic_20240503/20240503_C35085_002_S684280_NoBiotinOBD_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2494676), list(`_classname` = "resource", `_id` = 2494675), list(`_classname` = "resource", `_id` = 2494674), list(`_classname` = "resource", `_id` = 2494673)), modified = "2024-05-07 10:10:27", modifiedby = "tobiasko", name = "plotPrecursorHeatmap", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2495345, container = list(`_classname` = "order", `_id` = 35085), created = "2024-05-07 10:10:27", createdby = "tobiasko", filechecksum = "8dcc69d8b6426604f26ca796290605cd", junk = "false", modified = "2024-05-07 10:10:27", modifiedby = "tobiasko", name = "WU303159-20240507-1010-rawDiag.pdf", relativepath = "container_35085/workunit_303159/WU303159-20240507-1010-rawDiag.pdf", size = "458981", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35085/workunit_303159/WU303159-20240507-1010-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35085/workunit_303159/WU303159-20240507-1010-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303159))) The current plot is available as workunit 303159. Rendering actionButton to link workunit 303159 in B-Fabric. plotTicBasepeak Execution halted