Listening on http://127.0.0.1:36867 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... plotTicBasepeak resourcesSelected: /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_007_S688738_Bait2_Pulldown_Cells.raw, /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_006_S688741_NC_UV_2_Pulldown_Cells_NC.raw, /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_002_S688739_Bait3_Pulldown_Cells.raw, /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_004_S688742_NC_UV_3_Pulldown_Cells_NC.raw, /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_005_S688737_Bait1_Pulldown_Cells.raw, /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_003_S688740_NC_UV_1_Pulldown_Cells_NC.raw vals$rawfile: /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_007_S688738_Bait2_Pulldown_Cells.raw, /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_006_S688741_NC_UV_2_Pulldown_Cells_NC.raw, /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_002_S688739_Bait3_Pulldown_Cells.raw, /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_004_S688742_NC_UV_3_Pulldown_Cells_NC.raw, /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_005_S688737_Bait1_Pulldown_Cells.raw, /srv/www/htdocs//p35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_003_S688740_NC_UV_1_Pulldown_Cells_NC.raw reading index for 20240515_C35159_004_S688742_NC_UV_3_Pulldown_Cells_NC.raw... reading index for 20240515_C35159_002_S688739_Bait3_Pulldown_Cells.raw... reading index for 20240515_C35159_003_S688740_NC_UV_1_Pulldown_Cells_NC.raw... reading index for 20240515_C35159_005_S688737_Bait1_Pulldown_Cells.raw... reading index for 20240515_C35159_006_S688741_NC_UV_2_Pulldown_Cells_NC.raw... reading index for 20240515_C35159_007_S688738_Bait2_Pulldown_Cells.raw... saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 303581, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35159), created = "2024-05-16 15:54:07", createdby = "tobiasko", description = "input files:\np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_007_S688738_Bait2_Pulldown_Cells.raw \np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_006_S688741_NC_UV_2_Pulldown_Cells_NC.raw\np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_004_S688742_NC_UV_3_Pulldown_Cells_NC.raw\np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_002_S688739_Bait3_Pulldown_Cells.raw \np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_005_S688737_Bait1_Pulldown_Cells.raw \np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_003_S688740_NC_UV_1_Pulldown_Cells_NC.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2501601), list(`_classname` = "resource", `_id` = 2501600), list(`_classname` = "resource", `_id` = 2501597), list(`_classname` = "resource", `_id` = 2501596)), modified = "2024-05-16 15:54:07", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2502075, container = list(`_classname` = "order", `_id` = 35159), created = "2024-05-16 15:54:07", createdby = "tobiasko", filechecksum = "e76af1036547444465722e1e5b7de389", junk = "false", modified = "2024-05-16 15:54:07", modifiedby = "tobiasko", name = "WU303581-20240516-1554-rawDiag.pdf", relativepath = "container_35159/workunit_303581/WU303581-20240516-1554-rawDiag.pdf", size = "78746", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35159/workunit_303581/WU303581-20240516-1554-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35159/workunit_303581/WU303581-20240516-1554-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303581))) The current plot is available as workunit 303581. Rendering actionButton to link workunit 303581 in B-Fabric. saving 'login and webservicepassword' ... plotLockMassCorrection Rendering actionButton to link workunit 303581 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 303582, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35159), created = "2024-05-16 15:54:29", createdby = "tobiasko", description = "input files:\np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_007_S688738_Bait2_Pulldown_Cells.raw \np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_006_S688741_NC_UV_2_Pulldown_Cells_NC.raw\np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_004_S688742_NC_UV_3_Pulldown_Cells_NC.raw\np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_002_S688739_Bait3_Pulldown_Cells.raw \np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_005_S688737_Bait1_Pulldown_Cells.raw \np35159/Proteomics/EXPLORIS_2/analytic_20240515/20240515_C35159_003_S688740_NC_UV_1_Pulldown_Cells_NC.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2501601), list(`_classname` = "resource", `_id` = 2501600), list(`_classname` = "resource", `_id` = 2501597), list(`_classname` = "resource", `_id` = 2501596)), modified = "2024-05-16 15:54:29", modifiedby = "tobiasko", name = "plotLockMassCorrection", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2502076, container = list(`_classname` = "order", `_id` = 35159), created = "2024-05-16 15:54:30", createdby = "tobiasko", filechecksum = "3ef55ee444167a2ce08045e6484322f1", junk = "false", modified = "2024-05-16 15:54:30", modifiedby = "tobiasko", name = "WU303582-20240516-1554-rawDiag.pdf", relativepath = "container_35159/workunit_303582/WU303582-20240516-1554-rawDiag.pdf", size = "46543", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35159/workunit_303582/WU303582-20240516-1554-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35159/workunit_303582/WU303582-20240516-1554-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303582))) The current plot is available as workunit 303582. Rendering actionButton to link workunit 303582 in B-Fabric. plotInjectionTime Rendering actionButton to link workunit 303582 in B-Fabric. Execution halted