Listening on http://127.0.0.1:45999
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_008_S685480_NoLeak1POD1_Control_sp3_02abs_dia.raw, /srv/www/htdocs//p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_002_S685480_NoLeak1POD1_Control_iSTEnrich_02abs_dia.raw, /srv/www/htdocs//p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_004_S685480_NoLeak1POD1_Control_iSTEnrich_04abs_dia.raw
vals$rawfile: /srv/www/htdocs//p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_008_S685480_NoLeak1POD1_Control_sp3_02abs_dia.raw,
	/srv/www/htdocs//p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_002_S685480_NoLeak1POD1_Control_iSTEnrich_02abs_dia.raw,
	/srv/www/htdocs//p35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_004_S685480_NoLeak1POD1_Control_iSTEnrich_04abs_dia.raw
reading index for 20240516_C35114_002_S685480_NoLeak1POD1_Control_iSTEnrich_02abs_dia.raw...

reading index for 20240516_C35114_004_S685480_NoLeak1POD1_Control_iSTEnrich_04abs_dia.raw...

reading index for 20240516_C35114_008_S685480_NoLeak1POD1_Control_sp3_02abs_dia.raw...

plotTicBasepeak
saving 'login and webservicepassword' ...
list(list(`_classname` = "workunit", `_id` = 303727, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35114), created = "2024-05-22 17:26:49", createdby = "heinzmann", description = "input files:\np35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_008_S685480_NoLeak1POD1_Control_sp3_02abs_dia.raw \np35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_002_S685480_NoLeak1POD1_Control_iSTEnrich_02abs_dia.raw\np35114/Proteomics/LUMOS_2/analytic_20240516/20240516_C35114_004_S685480_NoLeak1POD1_Control_iSTEnrich_04abs_dia.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2504246), list(`_classname` = "resource", `_id` = 2504245), list(`_classname` = "resource", `_id` = 2504244)), modified = "2024-05-22 17:26:49", modifiedby = "heinzmann", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2504912, container = list(`_classname` = "order", `_id` = 35114), created = "2024-05-22 17:26:50", createdby = "heinzmann", filechecksum = "6ede0596291df5a5cd24c1d03dd3c5ad", junk = "false", modified = "2024-05-22 17:26:50", modifiedby = "heinzmann", name = "WU303727-20240522-1726-rawDiag.pdf", relativepath = "container_35114/workunit_303727/WU303727-20240522-1726-rawDiag.pdf", size = "42579", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35114/workunit_303727/WU303727-20240522-1726-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35114/workunit_303727/WU303727-20240522-1726-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303727)))
The current plot is available as workunit 303727.
Rendering actionButton to link workunit 303727 in B-Fabric.
saving 'login and webservicepassword' ...


Execution halted