Listening on http://127.0.0.1:46815 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. 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\np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_004_S692948_NB_2_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2507484), list(`_classname` = "resource", `_id` = 2507483), list(`_classname` = "resource", `_id` = 2507482), list(`_classname` = "resource", `_id` = 2507481), list(`_classname` = "resource", `_id` = 2507480), list(`_classname` = "resource", `_id` = 2507479), list(`_classname` = "resource", `_id` = 2507478), list(`_classname` = "resource", `_id` = 2507477), list(`_classname` = "resource", `_id` = 2507476), list( `_classname` = "resource", `_id` = 2507475), list(`_classname` = "resource", `_id` = 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"WU303882-20240527-1026-rawDiag.pdf", relativepath = "container_35244/workunit_303882/WU303882-20240527-1026-rawDiag.pdf", size = "117429", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35244/workunit_303882/WU303882-20240527-1026-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35244/workunit_303882/WU303882-20240527-1026-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303882))) The current plot is available as workunit 303882. Rendering actionButton to link workunit 303882 in B-Fabric. plotMassDistribution Rendering actionButton to link workunit 303882 in B-Fabric. plotPrecursorHeatmap plotInjectionTime list(list(`_classname` = "workunit", `_id` = 303883, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35244), created = "2024-05-27 10:28:56", createdby = "tobiasko", description = "input files:\np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_027_S692949_NB_3_Group_1.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_021_S692964_H100uMpA_3_Group_6.raw\np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_022_S692952_Thy_3_Group_2.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_029_S692959_H100uMmA_1_Group_5.raw\np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_023_S692960_H100uMmA_2_Group_5.raw\np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_014_S692962_H100uMpA_1_Group_6.raw\np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_020_S692954_UmA_2_Group_3.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_005_S692956_UpA_1_Group_4.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_034_S692950_Thy_1_Group_2.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_026_S692966_H2mMmA_2_Group_7.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_002_S692953_UmA_1_Group_3.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_032_S692969_H2mMpA_2_Group_8.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_017_S692970_H2mMpA_3_Group_8.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_016_S692958_UpA_3_Group_4.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_028_S692968_H2mMpA_1_Group_8.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_010_S692961_H100uMmA_3_Group_5.raw\np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_009_S692957_UpA_2_Group_4.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_033_S692955_UmA_3_Group_3.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_003_S692965_H2mMmA_1_Group_7.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_035_S692963_H100uMpA_2_Group_6.raw\np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_011_S692967_H2mMmA_3_Group_7.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_015_S692951_Thy_2_Group_2.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_008_S692947_NB_1_Group_1.raw \np35244/Proteomics/EXPLORIS_1/analytic_20240524/20240524_C35244_004_S692948_NB_2_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2507484), list(`_classname` = "resource", `_id` = 2507483), list(`_classname` = "resource", `_id` = 2507482), list(`_classname` = "resource", `_id` = 2507481), list(`_classname` = "resource", `_id` = 2507480), list(`_classname` = "resource", `_id` = 2507479), list(`_classname` = "resource", `_id` = 2507478), list(`_classname` = "resource", `_id` = 2507477), list(`_classname` = "resource", `_id` = 2507476), list( `_classname` = "resource", `_id` = 2507475), list(`_classname` = "resource", `_id` = 2507474), list(`_classname` = "resource", `_id` = 2507473), list(`_classname` = "resource", `_id` = 2507472), list(`_classname` = "resource", `_id` = 2507471), list(`_classname` = "resource", `_id` = 2507470), list(`_classname` = "resource", `_id` = 2507469), list(`_classname` = "resource", `_id` = 2507468), list(`_classname` = "resource", `_id` = 2507467), list(`_classname` = "resource", `_id` = 2507466), list(`_classname` = "resource", `_id` = 2507465), list(`_classname` = "resource", `_id` = 2507464), list(`_classname` = "resource", `_id` = 2507463)), modified = "2024-05-27 10:28:56", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2507627, container = list(`_classname` = "order", `_id` = 35244), created = "2024-05-27 10:28:57", createdby = "tobiasko", filechecksum = "1cbbe246a2bf7ac81d9583022fa612e1", junk = "false", modified = "2024-05-27 10:28:57", modifiedby = "tobiasko", name = "WU303883-20240527-1028-rawDiag.pdf", relativepath = "container_35244/workunit_303883/WU303883-20240527-1028-rawDiag.pdf", size = "2560108", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35244/workunit_303883/WU303883-20240527-1028-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35244/workunit_303883/WU303883-20240527-1028-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303883))) The current plot is available as workunit 303883. Rendering actionButton to link workunit 303883 in B-Fabric. plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. resourcesSelected: /srv/www/htdocs//p34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_006_S693454_sample4_80S_R_vivo_FT_X.raw, /srv/www/htdocs//p34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_004_S679766_Sample2_80S_R_vitro_X.raw, /srv/www/htdocs//p34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_011_S679765_Sample1_80S_control_Control.raw, /srv/www/htdocs//p34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_008_S693453_Sample3_80S_R_vivo_no_X.raw, /srv/www/htdocs//p34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_002_S693455_sample5_80S_R_vivo_elut_X.raw vals$rawfile: /srv/www/htdocs//p34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_006_S693454_sample4_80S_R_vivo_FT_X.raw, /srv/www/htdocs//p34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_004_S679766_Sample2_80S_R_vitro_X.raw, /srv/www/htdocs//p34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_011_S679765_Sample1_80S_control_Control.raw, /srv/www/htdocs//p34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_008_S693453_Sample3_80S_R_vivo_no_X.raw, /srv/www/htdocs//p34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_002_S693455_sample5_80S_R_vivo_elut_X.raw reading index for 20240523_C34974_002_S693455_sample5_80S_R_vivo_elut_X.raw... reading index for 20240523_C34974_006_S693454_sample4_80S_R_vivo_FT_X.raw... reading index for 20240523_C34974_011_S679765_Sample1_80S_control_Control.raw... reading index for 20240523_C34974_008_S693453_Sample3_80S_R_vivo_no_X.raw... reading index for 20240523_C34974_004_S679766_Sample2_80S_R_vitro_X.raw... plotTicBasepeak Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. list(list(`_classname` = "workunit", `_id` = 303925, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 34974), created = "2024-05-27 16:50:44", createdby = "heinzmann", description = "input files:\np34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_006_S693454_sample4_80S_R_vivo_FT_X.raw \np34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_004_S679766_Sample2_80S_R_vitro_X.raw \np34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_011_S679765_Sample1_80S_control_Control.raw\np34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_008_S693453_Sample3_80S_R_vivo_no_X.raw \np34974/Proteomics/FUSION_2/analytic_20240523/20240523_C34974_002_S693455_sample5_80S_R_vivo_elut_X.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2507929), list(`_classname` = "resource", `_id` = 2507928), list(`_classname` = "resource", `_id` = 2507927), list(`_classname` = "resource", `_id` = 2507926), list(`_classname` = "resource", `_id` = 2507925)), modified = "2024-05-27 16:50:44", modifiedby = "heinzmann", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2508020, container = list(`_classname` = "order", `_id` = 34974), created = "2024-05-27 16:50:44", createdby = "heinzmann", filechecksum = "bb15ca1e4be9f022ab436e97eee4ce50", junk = "false", modified = "2024-05-27 16:50:44", modifiedby = "heinzmann", name = "WU303925-20240527-1650-rawDiag.pdf", relativepath = "container_34974/workunit_303925/WU303925-20240527-1650-rawDiag.pdf", size = "309251", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_34974/workunit_303925/WU303925-20240527-1650-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_34974/workunit_303925/WU303925-20240527-1650-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303925))) The current plot is available as workunit 303925. Rendering actionButton to link workunit 303925 in B-Fabric. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Execution halted