Listening on http://127.0.0.1:43847 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_006_S693386_CCM_MN1_CCM_Mag-net.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_015_S693384_CCM_input2_concentrated_conditioned_media.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_008_S693388_CCM_MN3_CCM_Mag-net.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_007_S693387_CCM_MN2_CCM_Mag-net.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_016_S693385_CCM_input3_concentrated_conditioned_media.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_014_S693383_CCM_input1_concentrated_conditioned_media.raw vals$rawfile: /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_006_S693386_CCM_MN1_CCM_Mag-net.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_015_S693384_CCM_input2_concentrated_conditioned_media.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_008_S693388_CCM_MN3_CCM_Mag-net.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_007_S693387_CCM_MN2_CCM_Mag-net.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_016_S693385_CCM_input3_concentrated_conditioned_media.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_014_S693383_CCM_input1_concentrated_conditioned_media.raw reading index for 20240527_C35273_006_S693386_CCM_MN1_CCM_Mag-net.raw... reading index for 20240527_C35273_007_S693387_CCM_MN2_CCM_Mag-net.raw... reading index for 20240527_C35273_008_S693388_CCM_MN3_CCM_Mag-net.raw... reading index for 20240524_C35273_015_S693384_CCM_input2_concentrated_conditioned_media.raw... reading index for 20240524_C35273_014_S693383_CCM_input1_concentrated_conditioned_media.raw... reading index for 20240524_C35273_016_S693385_CCM_input3_concentrated_conditioned_media.raw... plotTicBasepeak saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 303945, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35273), created = "2024-05-28 11:05:44", createdby = "paolo", description = "input files:\np35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_006_S693386_CCM_MN1_CCM_Mag-net.raw \np35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_008_S693388_CCM_MN3_CCM_Mag-net.raw \np35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_015_S693384_CCM_input2_concentrated_conditioned_media.raw\np35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_007_S693387_CCM_MN2_CCM_Mag-net.raw \np35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_016_S693385_CCM_input3_concentrated_conditioned_media.raw\np35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_014_S693383_CCM_input1_concentrated_conditioned_media.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2508312), list(`_classname` = "resource", `_id` = 2508309), list(`_classname` = "resource", `_id` = 2508308), list(`_classname` = "resource", `_id` = 2508307)), modified = "2024-05-28 11:05:44", modifiedby = "paolo", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2508319, container = list(`_classname` = "order", `_id` = 35273), created = "2024-05-28 11:05:44", createdby = "paolo", filechecksum = "6ed7cddb6f734d61320b8b4ccbdaecd9", junk = "false", modified = "2024-05-28 11:05:44", modifiedby = "paolo", name = "WU303945-20240528-1105-rawDiag.pdf", relativepath = "container_35273/workunit_303945/WU303945-20240528-1105-rawDiag.pdf", size = "76922", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35273/workunit_303945/WU303945-20240528-1105-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35273/workunit_303945/WU303945-20240528-1105-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303945))) The current plot is available as workunit 303945. Rendering actionButton to link workunit 303945 in B-Fabric. saving 'login and webservicepassword' ... Rendering actionButton to link workunit 303945 in B-Fabric. plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_003_S693381_Plasma_MN2_human_plasma_Mag-net.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_012_S693379_Plasma_input3_input_human_plasma.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_004_S693382_Plasma_MN3_human_plasma_Mag-net.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_011_S693378_Plasma_input2_input_human_plasma.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_010_S693377_Plasma_input1_input_human_plasma.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_002_S693380_Plasma_MN1_human_plasma_Mag-net.raw vals$rawfile: /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_003_S693381_Plasma_MN2_human_plasma_Mag-net.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_012_S693379_Plasma_input3_input_human_plasma.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_004_S693382_Plasma_MN3_human_plasma_Mag-net.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_011_S693378_Plasma_input2_input_human_plasma.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_010_S693377_Plasma_input1_input_human_plasma.raw, /srv/www/htdocs//p35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_002_S693380_Plasma_MN1_human_plasma_Mag-net.raw reading index for 20240524_C35273_012_S693379_Plasma_input3_input_human_plasma.raw... reading index for 20240527_C35273_002_S693380_Plasma_MN1_human_plasma_Mag-net.raw... reading index for 20240527_C35273_003_S693381_Plasma_MN2_human_plasma_Mag-net.raw... reading index for 20240524_C35273_011_S693378_Plasma_input2_input_human_plasma.raw... reading index for 20240527_C35273_004_S693382_Plasma_MN3_human_plasma_Mag-net.raw... reading index for 20240524_C35273_010_S693377_Plasma_input1_input_human_plasma.raw... plotTicBasepeak saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 303951, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35273), created = "2024-05-28 11:20:06", createdby = "paolo", description = "input files:\np35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_003_S693381_Plasma_MN2_human_plasma_Mag-net.raw \np35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_012_S693379_Plasma_input3_input_human_plasma.raw\np35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_004_S693382_Plasma_MN3_human_plasma_Mag-net.raw \np35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_011_S693378_Plasma_input2_input_human_plasma.raw\np35273/Proteomics/LUMOS_2/analytic_20240524/20240524_C35273_010_S693377_Plasma_input1_input_human_plasma.raw\np35273/Proteomics/LUMOS_2/analytic_20240524/20240527_C35273_002_S693380_Plasma_MN1_human_plasma_Mag-net.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2508329), list(`_classname` = "resource", `_id` = 2508328), list(`_classname` = "resource", `_id` = 2508327), list(`_classname` = "resource", `_id` = 2508326), list(`_classname` = "resource", `_id` = 2508325), list(`_classname` = "resource", `_id` = 2508324)), modified = "2024-05-28 11:20:06", modifiedby = "paolo", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2508333, container = list(`_classname` = "order", `_id` = 35273), created = "2024-05-28 11:20:06", createdby = "paolo", filechecksum = "304af3ad24115b589902b63085fc198d", junk = "false", modified = "2024-05-28 11:20:06", modifiedby = "paolo", name = "WU303951-20240528-1120-rawDiag.pdf", relativepath = "container_35273/workunit_303951/WU303951-20240528-1120-rawDiag.pdf", size = "78935", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35273/workunit_303951/WU303951-20240528-1120-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35273/workunit_303951/WU303951-20240528-1120-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 303951))) The current plot is available as workunit 303951. Rendering actionButton to link workunit 303951 in B-Fabric. saving 'login and webservicepassword' ... plotPrecursorHeatmap plotInjectionTime plotChargeState plotMassDistribution Execution halted