Listening on http://127.0.0.1:37105 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... plotTicBasepeak resourcesSelected: /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_009_S697738_WT-rep1_Full_length.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_005_S697743_Mutant-rep3_Mutant.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_010_S697739_WT-rep2_Full_length.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_002_S697746_KO-rep3_Empty_Vector__EV_.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_008_S697744_KO-rep1_Empty_Vector__EV_.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_014_S697745_KO-rep2_Empty_Vector__EV_.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_004_S697741_Mutant-rep1_Mutant.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_003_S697740_WT-rep3_Full_length.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_011_S697742_Mutant-rep2_Mutant.raw vals$rawfile: /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_009_S697738_WT-rep1_Full_length.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_005_S697743_Mutant-rep3_Mutant.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_010_S697739_WT-rep2_Full_length.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_002_S697746_KO-rep3_Empty_Vector__EV_.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_008_S697744_KO-rep1_Empty_Vector__EV_.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_014_S697745_KO-rep2_Empty_Vector__EV_.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_004_S697741_Mutant-rep1_Mutant.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_003_S697740_WT-rep3_Full_length.raw, /srv/www/htdocs//p35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_011_S697742_Mutant-rep2_Mutant.raw reading index for 20240530_C35356_014_S697745_KO-rep2_Empty_Vector__EV_.raw... reading index for 20240530_C35356_004_S697741_Mutant-rep1_Mutant.raw... reading index for 20240530_C35356_005_S697743_Mutant-rep3_Mutant.raw... reading index for 20240530_C35356_011_S697742_Mutant-rep2_Mutant.raw... reading index for 20240530_C35356_008_S697744_KO-rep1_Empty_Vector__EV_.raw... reading index for 20240530_C35356_002_S697746_KO-rep3_Empty_Vector__EV_.raw... reading index for 20240530_C35356_009_S697738_WT-rep1_Full_length.raw... reading index for 20240530_C35356_003_S697740_WT-rep3_Full_length.raw... reading index for 20240530_C35356_010_S697739_WT-rep2_Full_length.raw... saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 304122, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35356), created = "2024-06-03 09:31:51", createdby = "tobiasko", description = "input files:\np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_009_S697738_WT-rep1_Full_length.raw \np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_005_S697743_Mutant-rep3_Mutant.raw \np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_010_S697739_WT-rep2_Full_length.raw \np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_002_S697746_KO-rep3_Empty_Vector__EV_.raw\np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_008_S697744_KO-rep1_Empty_Vector__EV_.raw\np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_014_S697745_KO-rep2_Empty_Vector__EV_.raw\np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_004_S697741_Mutant-rep1_Mutant.raw \np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_003_S697740_WT-rep3_Full_length.raw \np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_011_S697742_Mutant-rep2_Mutant.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2511027), list(`_classname` = "resource", `_id` = 2511026), list(`_classname` = "resource", `_id` = 2511025), list(`_classname` = "resource", `_id` = 2511024), list(`_classname` = "resource", `_id` = 2511023), list(`_classname` = "resource", `_id` = 2511022), list(`_classname` = "resource", `_id` = 2511021), list(`_classname` = "resource", `_id` = 2511020), list(`_classname` = "resource", `_id` = 2511019)), modified = "2024-06-03 09:31:51", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2511066, container = list(`_classname` = "order", `_id` = 35356), created = "2024-06-03 09:31:52", createdby = "tobiasko", filechecksum = "f5f8ea5188b680886cd3f9aea8ad7edd", junk = "false", modified = "2024-06-03 09:31:52", modifiedby = "tobiasko", name = "WU304122-20240603-0931-rawDiag.pdf", relativepath = "container_35356/workunit_304122/WU304122-20240603-0931-rawDiag.pdf", size = "91751", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35356/workunit_304122/WU304122-20240603-0931-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35356/workunit_304122/WU304122-20240603-0931-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304122))) The current plot is available as workunit 304122. Rendering actionButton to link workunit 304122 in B-Fabric. saving 'login and webservicepassword' ... plotMassDistribution Rendering actionButton to link workunit 304122 in B-Fabric. Warning: Error in : Discrete value supplied to continuous scale 188: stop 187: train_continuous 186: self$range$train 185: train 184: scales[[i]][[method]] 183: FUN 182: lapply 181: FUN 180: lapply 179: scale_apply 178: train_scales 177: self$facet$train_scales 176: train_position 175: layout$train_position 174: ggplot_build.ggplot 172: print.ggplot 167: func 165: f 164: Reduce 155: do 154: hybrid_chain 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp plotLockMassCorrection plotInjectionTime list(list(`_classname` = "workunit", `_id` = 304123, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35356), created = "2024-06-03 09:33:08", createdby = "tobiasko", description = "input files:\np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_009_S697738_WT-rep1_Full_length.raw \np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_005_S697743_Mutant-rep3_Mutant.raw \np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_010_S697739_WT-rep2_Full_length.raw \np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_002_S697746_KO-rep3_Empty_Vector__EV_.raw\np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_008_S697744_KO-rep1_Empty_Vector__EV_.raw\np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_014_S697745_KO-rep2_Empty_Vector__EV_.raw\np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_004_S697741_Mutant-rep1_Mutant.raw \np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_003_S697740_WT-rep3_Full_length.raw \np35356/Proteomics/LUMOS_2/analytic_20240530/20240530_C35356_011_S697742_Mutant-rep2_Mutant.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2511027), list(`_classname` = "resource", `_id` = 2511026), list(`_classname` = "resource", `_id` = 2511025), list(`_classname` = "resource", `_id` = 2511024), list(`_classname` = "resource", `_id` = 2511023), list(`_classname` = "resource", `_id` = 2511022), list(`_classname` = "resource", `_id` = 2511021), list(`_classname` = "resource", `_id` = 2511020), list(`_classname` = "resource", `_id` = 2511019)), modified = "2024-06-03 09:33:08", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2511067, container = list(`_classname` = "order", `_id` = 35356), created = "2024-06-03 09:33:09", createdby = "tobiasko", filechecksum = "4d46b4b5380f56b0aed37adb4858298a", junk = "false", modified = "2024-06-03 09:33:09", modifiedby = "tobiasko", name = "WU304123-20240603-0933-rawDiag.pdf", relativepath = "container_35356/workunit_304123/WU304123-20240603-0933-rawDiag.pdf", size = "974770", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35356/workunit_304123/WU304123-20240603-0933-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35356/workunit_304123/WU304123-20240603-0933-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304123))) The current plot is available as workunit 304123. Rendering actionButton to link workunit 304123 in B-Fabric. Execution halted