Listening on http://127.0.0.1:39669 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_006_S702249_Gel-GT10.raw, /srv/www/htdocs//p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_002_S702247_Gel-J2012.raw, /srv/www/htdocs//p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_004_S702248_Gel-KB17.raw vals$rawfile: /srv/www/htdocs//p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_006_S702249_Gel-GT10.raw, /srv/www/htdocs//p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_002_S702247_Gel-J2012.raw, /srv/www/htdocs//p35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_004_S702248_Gel-KB17.raw reading index for 20240605_C35407_006_S702249_Gel-GT10.raw... reading index for 20240605_C35407_002_S702247_Gel-J2012.raw... reading index for 20240605_C35407_004_S702248_Gel-KB17.raw... plotScanTime plotTicBasepeak saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 304440, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35407), created = "2024-06-11 12:09:57", createdby = "heinzmann", description = "input files:\np35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_006_S702249_Gel-GT10.raw \np35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_002_S702247_Gel-J2012.raw\np35407/Proteomics/QEXACTIVE_1/analytic_20240605/20240605_C35407_004_S702248_Gel-KB17.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2513658), list(`_classname` = "resource", `_id` = 2513657), list(`_classname` = "resource", `_id` = 2513656)), modified = "2024-06-11 12:09:57", modifiedby = "heinzmann", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2516823, container = list(`_classname` = "order", `_id` = 35407), created = "2024-06-11 12:09:57", createdby = "heinzmann", filechecksum = "3309ee66ee603769b66509843a339361", junk = "false", modified = "2024-06-11 12:09:57", modifiedby = "heinzmann", name = "WU304440-20240611-1209-rawDiag.pdf", relativepath = "container_35407/workunit_304440/WU304440-20240611-1209-rawDiag.pdf", size = "202264", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35407/workunit_304440/WU304440-20240611-1209-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35407/workunit_304440/WU304440-20240611-1209-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304440))) The current plot is available as workunit 304440. Rendering actionButton to link workunit 304440 in B-Fabric. saving 'login and webservicepassword' ... plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_003_S702243_EV-PD1.raw, /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_006_S702245_EV-KA1.raw, /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_005_S702244_EV-PD2.raw, /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_002_S702246_EV-KA2.raw vals$rawfile: /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_003_S702243_EV-PD1.raw, /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_006_S702245_EV-KA1.raw, /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_005_S702244_EV-PD2.raw, /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_002_S702246_EV-KA2.raw reading index for 20240607_C35407_002_S702246_EV-KA2.raw... reading index for 20240607_C35407_005_S702244_EV-PD2.raw... reading index for 20240607_C35407_003_S702243_EV-PD1.raw... reading index for 20240607_C35407_006_S702245_EV-KA1.raw... plotTicBasepeak saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 304443, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35407), created = "2024-06-11 12:16:54", createdby = "heinzmann", description = "input files:\np35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_003_S702243_EV-PD1.raw\np35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_006_S702245_EV-KA1.raw\np35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_005_S702244_EV-PD2.raw\np35407/Proteomics/LUMOS_2/analytic_20240607/20240607_C35407_002_S702246_EV-KA2.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2515071), list(`_classname` = "resource", `_id` = 2515070), list(`_classname` = "resource", `_id` = 2515069), list(`_classname` = "resource", `_id` = 2515068)), modified = "2024-06-11 12:16:54", modifiedby = "heinzmann", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2516828, container = list(`_classname` = "order", `_id` = 35407), created = "2024-06-11 12:16:55", createdby = "heinzmann", filechecksum = "201ea4f8fc5454b5564dcecfacf24685", junk = "false", modified = "2024-06-11 12:16:55", modifiedby = "heinzmann", name = "WU304443-20240611-1216-rawDiag.pdf", relativepath = "container_35407/workunit_304443/WU304443-20240611-1216-rawDiag.pdf", size = "305743", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35407/workunit_304443/WU304443-20240611-1216-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35407/workunit_304443/WU304443-20240611-1216-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304443))) The current plot is available as workunit 304443. Rendering actionButton to link workunit 304443 in B-Fabric. saving 'login and webservicepassword' ... Execution halted