Listening on http://127.0.0.1:46093
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_002_S702246_EV-KA2.raw, /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_006_S702245_EV-KA1.raw, /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_005_S702244_EV-PD2.raw, /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_003_S702243_EV-PD1.raw
vals$rawfile: /srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_002_S702246_EV-KA2.raw,
	/srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_006_S702245_EV-KA1.raw,
	/srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_005_S702244_EV-PD2.raw,
	/srv/www/htdocs//p35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_003_S702243_EV-PD1.raw
reading index for 20240612_C35407_002_S702246_EV-KA2.raw...

reading index for 20240612_C35407_005_S702244_EV-PD2.raw...

reading index for 20240612_C35407_006_S702245_EV-KA1.raw...

reading index for 20240612_C35407_003_S702243_EV-PD1.raw...

plotTicBasepeak
saving 'login and webservicepassword' ...
list(list(`_classname` = "workunit", `_id` = 304544, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35407), created = "2024-06-13 12:57:20", createdby = "heinzmann", description = "input files:\np35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_002_S702246_EV-KA2.raw\np35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_006_S702245_EV-KA1.raw\np35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_005_S702244_EV-PD2.raw\np35407/Proteomics/LUMOS_2/analytic_20240612/20240612_C35407_003_S702243_EV-PD1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2521744), list(`_classname` = "resource", `_id` = 2521743), list(`_classname` = "resource", `_id` = 2521742), list(`_classname` = "resource", `_id` = 2521741)), modified = "2024-06-13 12:57:20", modifiedby = "heinzmann", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2521751, container = list(`_classname` = "order", `_id` = 35407), created = "2024-06-13 12:57:20", createdby = "heinzmann", filechecksum = "23e44615ccd0abb3a46eafb5dc3d14c3", junk = "false", modified = "2024-06-13 12:57:20", modifiedby = "heinzmann", name = "WU304544-20240613-1257-rawDiag.pdf", relativepath = "container_35407/workunit_304544/WU304544-20240613-1257-rawDiag.pdf", size = "238640", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35407/workunit_304544/WU304544-20240613-1257-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35407/workunit_304544/WU304544-20240613-1257-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304544)))
The current plot is available as workunit 304544.
Rendering actionButton to link workunit 304544 in B-Fabric.
saving 'login and webservicepassword' ...
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...


Execution halted