Listening on http://127.0.0.1:46217 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotInjectionTime output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. plotTicBasepeak resourcesSelected: /srv/www/htdocs//p35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_002_S710026_sampleA_Group_1.raw, /srv/www/htdocs//p35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_004_S710027_sampleB_Group_2.raw vals$rawfile: /srv/www/htdocs//p35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_002_S710026_sampleA_Group_1.raw, /srv/www/htdocs//p35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_004_S710027_sampleB_Group_2.raw reading index for 20240613_C35401_004_S710027_sampleB_Group_2.raw... reading index for 20240613_C35401_002_S710026_sampleA_Group_1.raw... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. list(list(`_classname` = "workunit", `_id` = 304613, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35401), created = "2024-06-17 08:51:50", createdby = "tobiasko", description = "input files:\np35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_002_S710026_sampleA_Group_1.raw\np35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_004_S710027_sampleB_Group_2.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2522268), list(`_classname` = "resource", `_id` = 2522267)), modified = "2024-06-17 08:51:50", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522272, container = list(`_classname` = "order", `_id` = 35401), created = "2024-06-17 08:51:51", createdby = "tobiasko", filechecksum = "54a4b345c24d3b2537b4d3666007ba33", junk = "false", modified = "2024-06-17 08:51:51", modifiedby = "tobiasko", name = "WU304613-20240617-0851-rawDiag.pdf", relativepath = "container_35401/workunit_304613/WU304613-20240617-0851-rawDiag.pdf", size = "28372", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35401/workunit_304613/WU304613-20240617-0851-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35401/workunit_304613/WU304613-20240617-0851-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304613))) The current plot is available as workunit 304613. Rendering actionButton to link workunit 304613 in B-Fabric. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "project", isolate(input$project), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning: Error in : Discrete value supplied to continuous scale 188: stop 187: train_continuous 186: self$range$train 185: train 184: scales[[i]][[method]] 183: FUN 182: lapply 181: FUN 180: lapply 179: scale_apply 178: train_scales 177: self$facet$train_scales 176: train_position 175: layout$train_position 174: ggplot_build.ggplot 172: print.ggplot 167: func 165: f 164: Reduce 155: do 154: hybrid_chain 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp plotLockMassCorrection Rendering actionButton to link workunit 304613 in B-Fabric. Warning: Computation failed in `stat_smooth()` Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) plotInjectionTime Warning: Computation failed in `stat_smooth()` Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) list(list(`_classname` = "workunit", `_id` = 304614, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35401), created = "2024-06-17 08:55:08", createdby = "tobiasko", description = "input files:\np35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_002_S710026_sampleA_Group_1.raw\np35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_004_S710027_sampleB_Group_2.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2522268), list(`_classname` = "resource", `_id` = 2522267)), modified = "2024-06-17 08:55:08", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522273, container = list(`_classname` = "order", `_id` = 35401), created = "2024-06-17 08:55:08", createdby = "tobiasko", filechecksum = "ea84bc673d797269ec25c0c6770e4c2f", junk = "false", modified = "2024-06-17 08:55:08", modifiedby = "tobiasko", name = "WU304614-20240617-0855-rawDiag.pdf", relativepath = "container_35401/workunit_304614/WU304614-20240617-0855-rawDiag.pdf", size = "204281", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35401/workunit_304614/WU304614-20240617-0855-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35401/workunit_304614/WU304614-20240617-0855-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304614))) The current plot is available as workunit 304614. Rendering actionButton to link workunit 304614 in B-Fabric. `geom_smooth()` using formula = 'y ~ x' plotCycleLoad Rendering actionButton to link workunit 304614 in B-Fabric. plotCycleTime plotMassDistribution plotMzDistribution list(list(`_classname` = "workunit", `_id` = 304615, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35401), created = "2024-06-17 08:55:56", createdby = "tobiasko", description = "input files:\np35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_002_S710026_sampleA_Group_1.raw\np35401/Proteomics/LUMOS_2/analytic_20240614/20240613_C35401_004_S710027_sampleB_Group_2.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2522268), list(`_classname` = "resource", `_id` = 2522267)), modified = "2024-06-17 08:55:56", modifiedby = "tobiasko", name = "plotMzDistribution", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522274, container = list(`_classname` = "order", `_id` = 35401), created = "2024-06-17 08:55:57", createdby = "tobiasko", filechecksum = "cb1dd6105dc74dd1c1a4d7399a698baf", junk = "false", modified = "2024-06-17 08:55:57", modifiedby = "tobiasko", name = "WU304615-20240617-0855-rawDiag.pdf", relativepath = "container_35401/workunit_304615/WU304615-20240617-0855-rawDiag.pdf", size = "582784", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35401/workunit_304615/WU304615-20240617-0855-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35401/workunit_304615/WU304615-20240617-0855-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304615))) The current plot is available as workunit 304615. Rendering actionButton to link workunit 304615 in B-Fabric. plotTicBasepeak Rendering actionButton to link workunit 304615 in B-Fabric. Warning: Error in : Discrete value supplied to continuous scale 188: stop 187: train_continuous 186: self$range$train 185: train 184: scales[[i]][[method]] 183: FUN 182: lapply 181: FUN 180: lapply 179: scale_apply 178: train_scales 177: self$facet$train_scales 176: train_position 175: layout$train_position 174: ggplot_build.ggplot 172: print.ggplot 167: func 165: f 164: Reduce 155: do 154: hybrid_chain 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp plotLockMassCorrection plotTicBasepeak resourcesSelected: /srv/www/htdocs//p35302/Proteomics/LUMOS_2/analytic_20240530/20240530_C35302_002_S695724_HeLa_Galt1sCGrx1pHA_01IAA_Cell_extracts.raw vals$rawfile: /srv/www/htdocs//p35302/Proteomics/LUMOS_2/analytic_20240530/20240530_C35302_002_S695724_HeLa_Galt1sCGrx1pHA_01IAA_Cell_extracts.raw reading index for 20240530_C35302_002_S695724_HeLa_Galt1sCGrx1pHA_01IAA_Cell_extracts.raw... list(list(`_classname` = "workunit", `_id` = 304630, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35302), created = "2024-06-17 11:00:17", createdby = "tobiasko", description = "input files:\np35302/Proteomics/LUMOS_2/analytic_20240530/20240530_C35302_002_S695724_HeLa_Galt1sCGrx1pHA_01IAA_Cell_extracts.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2510906)), modified = "2024-06-17 11:00:17", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522344, container = list(`_classname` = "order", `_id` = 35302), created = "2024-06-17 11:00:18", createdby = "tobiasko", filechecksum = "698886b4a9ef2c083795f9f44fe3c739", junk = "false", modified = "2024-06-17 11:00:18", modifiedby = "tobiasko", name = "WU304630-20240617-1100-rawDiag.pdf", relativepath = "container_35302/workunit_304630/WU304630-20240617-1100-rawDiag.pdf", size = "23809", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35302/workunit_304630/WU304630-20240617-1100-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35302/workunit_304630/WU304630-20240617-1100-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304630))) The current plot is available as workunit 304630. Rendering actionButton to link workunit 304630 in B-Fabric. plotScanTime plotPrecursorHeatmap list(list(`_classname` = "workunit", `_id` = 304631, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35302), created = "2024-06-17 11:00:46", createdby = "tobiasko", description = "input files:\np35302/Proteomics/LUMOS_2/analytic_20240530/20240530_C35302_002_S695724_HeLa_Galt1sCGrx1pHA_01IAA_Cell_extracts.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2510906)), modified = "2024-06-17 11:00:46", modifiedby = "tobiasko", name = "plotPrecursorHeatmap", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522348, container = list(`_classname` = "order", `_id` = 35302), created = "2024-06-17 11:00:46", createdby = "tobiasko", filechecksum = "0e3a7529452dcbe3a6089c5d23c0dd60", junk = "false", modified = "2024-06-17 11:00:46", modifiedby = "tobiasko", name = "WU304631-20240617-1100-rawDiag.pdf", relativepath = "container_35302/workunit_304631/WU304631-20240617-1100-rawDiag.pdf", size = "26337", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35302/workunit_304631/WU304631-20240617-1100-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35302/workunit_304631/WU304631-20240617-1100-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304631))) The current plot is available as workunit 304631. Rendering actionButton to link workunit 304631 in B-Fabric. plotMzDistribution plotLockMassCorrection Warning: Error in : Discrete value supplied to continuous scale 188: stop 187: train_continuous 186: self$range$train 185: train 184: scales[[i]][[method]] 183: FUN 182: lapply 181: FUN 180: lapply 179: scale_apply 178: train_scales 177: self$facet$train_scales 176: train_position 175: layout$train_position 174: ggplot_build.ggplot 172: print.ggplot 167: func 165: f 164: Reduce 155: do 154: hybrid_chain 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp plotInjectionTime list(list(`_classname` = "workunit", `_id` = 304632, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35302), created = "2024-06-17 11:01:13", createdby = "tobiasko", description = "input files:\np35302/Proteomics/LUMOS_2/analytic_20240530/20240530_C35302_002_S695724_HeLa_Galt1sCGrx1pHA_01IAA_Cell_extracts.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2510906)), modified = "2024-06-17 11:01:13", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522349, container = list(`_classname` = "order", `_id` = 35302), created = "2024-06-17 11:01:14", createdby = "tobiasko", filechecksum = "a1ddda01cc147dd5193304d1d0613392", junk = "false", modified = "2024-06-17 11:01:14", modifiedby = "tobiasko", name = "WU304632-20240617-1101-rawDiag.pdf", relativepath = "container_35302/workunit_304632/WU304632-20240617-1101-rawDiag.pdf", size = "76715", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35302/workunit_304632/WU304632-20240617-1101-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35302/workunit_304632/WU304632-20240617-1101-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304632))) The current plot is available as workunit 304632. Rendering actionButton to link workunit 304632 in B-Fabric. plotCycleTime list(list(`_classname` = "workunit", `_id` = 304633, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35302), created = "2024-06-17 11:01:25", createdby = "tobiasko", description = "input files:\np35302/Proteomics/LUMOS_2/analytic_20240530/20240530_C35302_002_S695724_HeLa_Galt1sCGrx1pHA_01IAA_Cell_extracts.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2510906)), modified = "2024-06-17 11:01:25", modifiedby = "tobiasko", name = "plotCycleTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522350, container = list(`_classname` = "order", `_id` = 35302), created = "2024-06-17 11:01:25", createdby = "tobiasko", filechecksum = "90540f8c8989a6c19f3cb771cde14af3", junk = "false", modified = "2024-06-17 11:01:25", modifiedby = "tobiasko", name = "WU304633-20240617-1101-rawDiag.pdf", relativepath = "container_35302/workunit_304633/WU304633-20240617-1101-rawDiag.pdf", size = "18334", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35302/workunit_304633/WU304633-20240617-1101-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35302/workunit_304633/WU304633-20240617-1101-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304633))) The current plot is available as workunit 304633. Rendering actionButton to link workunit 304633 in B-Fabric. plotChargeState resourcesSelected: /srv/www/htdocs//p35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_005_S700404_HEK293_Galt1sCGrx1pHA_01IAA_rep4_Cell_extracts.raw, /srv/www/htdocs//p35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_006_S698655_HEK293_Galt1sCGrx1pHA_01IAA_rep2_Cell_extracts.raw, /srv/www/htdocs//p35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_002_S698656_HEK293_Galt1sCGrx1pHA_01IAA_rep3_Cell_extracts.raw, /srv/www/htdocs//p35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_003_S698654_HEK293_Galt1sCGrx1pHA_01IAA_rep1_Cell_extracts.raw vals$rawfile: /srv/www/htdocs//p35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_005_S700404_HEK293_Galt1sCGrx1pHA_01IAA_rep4_Cell_extracts.raw, /srv/www/htdocs//p35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_006_S698655_HEK293_Galt1sCGrx1pHA_01IAA_rep2_Cell_extracts.raw, /srv/www/htdocs//p35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_002_S698656_HEK293_Galt1sCGrx1pHA_01IAA_rep3_Cell_extracts.raw, /srv/www/htdocs//p35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_003_S698654_HEK293_Galt1sCGrx1pHA_01IAA_rep1_Cell_extracts.raw reading index for 20240606_C35373_005_S700404_HEK293_Galt1sCGrx1pHA_01IAA_rep4_Cell_extracts.raw... reading index for 20240606_C35373_006_S698655_HEK293_Galt1sCGrx1pHA_01IAA_rep2_Cell_extracts.raw... reading index for 20240606_C35373_002_S698656_HEK293_Galt1sCGrx1pHA_01IAA_rep3_Cell_extracts.raw... reading index for 20240606_C35373_003_S698654_HEK293_Galt1sCGrx1pHA_01IAA_rep1_Cell_extracts.raw... plotTicBasepeak list(list(`_classname` = "workunit", `_id` = 304634, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35373), created = "2024-06-17 11:05:47", createdby = "tobiasko", description = "input files:\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_005_S700404_HEK293_Galt1sCGrx1pHA_01IAA_rep4_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_006_S698655_HEK293_Galt1sCGrx1pHA_01IAA_rep2_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_002_S698656_HEK293_Galt1sCGrx1pHA_01IAA_rep3_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_003_S698654_HEK293_Galt1sCGrx1pHA_01IAA_rep1_Cell_extracts.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2513788), list(`_classname` = "resource", `_id` = 2513787), list(`_classname` = "resource", `_id` = 2513786), list(`_classname` = "resource", `_id` = 2513785)), modified = "2024-06-17 11:05:47", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522351, container = list(`_classname` = "order", `_id` = 35373), created = "2024-06-17 11:05:48", createdby = "tobiasko", filechecksum = "fb6336357ae02e5b92ed0a41b4247428", junk = "false", modified = "2024-06-17 11:05:48", modifiedby = "tobiasko", name = "WU304634-20240617-1105-rawDiag.pdf", relativepath = "container_35373/workunit_304634/WU304634-20240617-1105-rawDiag.pdf", size = "77517", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35373/workunit_304634/WU304634-20240617-1105-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35373/workunit_304634/WU304634-20240617-1105-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304634))) The current plot is available as workunit 304634. Rendering actionButton to link workunit 304634 in B-Fabric. plotScanTime plotPrecursorHeatmap list(list(`_classname` = "workunit", `_id` = 304635, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35373), created = "2024-06-17 11:06:18", createdby = "tobiasko", description = "input files:\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_005_S700404_HEK293_Galt1sCGrx1pHA_01IAA_rep4_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_006_S698655_HEK293_Galt1sCGrx1pHA_01IAA_rep2_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_002_S698656_HEK293_Galt1sCGrx1pHA_01IAA_rep3_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_003_S698654_HEK293_Galt1sCGrx1pHA_01IAA_rep1_Cell_extracts.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2513788), list(`_classname` = "resource", `_id` = 2513787), list(`_classname` = "resource", `_id` = 2513786), list(`_classname` = "resource", `_id` = 2513785)), modified = "2024-06-17 11:06:18", modifiedby = "tobiasko", name = "plotPrecursorHeatmap", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522352, container = list(`_classname` = "order", `_id` = 35373), created = "2024-06-17 11:06:18", createdby = "tobiasko", filechecksum = "473a3c04e8642d0c8d37975d05be6b46", junk = "false", modified = "2024-06-17 11:06:18", modifiedby = "tobiasko", name = "WU304635-20240617-1106-rawDiag.pdf", relativepath = "container_35373/workunit_304635/WU304635-20240617-1106-rawDiag.pdf", size = "85417", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35373/workunit_304635/WU304635-20240617-1106-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35373/workunit_304635/WU304635-20240617-1106-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304635))) The current plot is available as workunit 304635. Rendering actionButton to link workunit 304635 in B-Fabric. plotLockMassCorrection Warning: Error in : Discrete value supplied to continuous scale 188: stop 187: train_continuous 186: self$range$train 185: train 184: scales[[i]][[method]] 183: FUN 182: lapply 181: FUN 180: lapply 179: scale_apply 178: train_scales 177: self$facet$train_scales 176: train_position 175: layout$train_position 174: ggplot_build.ggplot 172: print.ggplot 167: func 165: f 164: Reduce 155: do 154: hybrid_chain 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp plotInjectionTime list(list(`_classname` = "workunit", `_id` = 304636, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35373), created = "2024-06-17 11:06:49", createdby = "tobiasko", description = "input files:\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_005_S700404_HEK293_Galt1sCGrx1pHA_01IAA_rep4_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_006_S698655_HEK293_Galt1sCGrx1pHA_01IAA_rep2_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_002_S698656_HEK293_Galt1sCGrx1pHA_01IAA_rep3_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_003_S698654_HEK293_Galt1sCGrx1pHA_01IAA_rep1_Cell_extracts.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2513788), list(`_classname` = "resource", `_id` = 2513787), list(`_classname` = "resource", `_id` = 2513786), list(`_classname` = "resource", `_id` = 2513785)), modified = "2024-06-17 11:06:49", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522353, container = list(`_classname` = "order", `_id` = 35373), created = "2024-06-17 11:06:50", createdby = "tobiasko", filechecksum = "cf21b382bfb08b83ecd79171daff4a43", junk = "false", modified = "2024-06-17 11:06:50", modifiedby = "tobiasko", name = "WU304636-20240617-1106-rawDiag.pdf", relativepath = "container_35373/workunit_304636/WU304636-20240617-1106-rawDiag.pdf", size = "279592", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35373/workunit_304636/WU304636-20240617-1106-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35373/workunit_304636/WU304636-20240617-1106-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304636))) The current plot is available as workunit 304636. Rendering actionButton to link workunit 304636 in B-Fabric. plotCycleTime list(list(`_classname` = "workunit", `_id` = 304637, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35373), created = "2024-06-17 11:07:01", createdby = "tobiasko", description = "input files:\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_005_S700404_HEK293_Galt1sCGrx1pHA_01IAA_rep4_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_006_S698655_HEK293_Galt1sCGrx1pHA_01IAA_rep2_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_002_S698656_HEK293_Galt1sCGrx1pHA_01IAA_rep3_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_003_S698654_HEK293_Galt1sCGrx1pHA_01IAA_rep1_Cell_extracts.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2513788), list(`_classname` = "resource", `_id` = 2513787), list(`_classname` = "resource", `_id` = 2513786), list(`_classname` = "resource", `_id` = 2513785)), modified = "2024-06-17 11:07:01", modifiedby = "tobiasko", name = "plotCycleTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522354, container = list(`_classname` = "order", `_id` = 35373), created = "2024-06-17 11:07:01", createdby = "tobiasko", filechecksum = "ac4e19c8fc024b21968474f8a5034453", junk = "false", modified = "2024-06-17 11:07:01", modifiedby = "tobiasko", name = "WU304637-20240617-1107-rawDiag.pdf", relativepath = "container_35373/workunit_304637/WU304637-20240617-1107-rawDiag.pdf", size = "54762", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35373/workunit_304637/WU304637-20240617-1107-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35373/workunit_304637/WU304637-20240617-1107-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304637))) The current plot is available as workunit 304637. Rendering actionButton to link workunit 304637 in B-Fabric. plotCycleLoad `geom_smooth()` using formula = 'y ~ x' `geom_smooth()` using formula = 'y ~ x' list(list(`_classname` = "workunit", `_id` = 304638, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35373), created = "2024-06-17 11:07:15", createdby = "tobiasko", description = "input files:\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_005_S700404_HEK293_Galt1sCGrx1pHA_01IAA_rep4_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_006_S698655_HEK293_Galt1sCGrx1pHA_01IAA_rep2_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_002_S698656_HEK293_Galt1sCGrx1pHA_01IAA_rep3_Cell_extracts.raw\np35373/Proteomics/LUMOS_2/analytic_20240606/20240606_C35373_003_S698654_HEK293_Galt1sCGrx1pHA_01IAA_rep1_Cell_extracts.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2513788), list(`_classname` = "resource", `_id` = 2513787), list(`_classname` = "resource", `_id` = 2513786), list(`_classname` = "resource", `_id` = 2513785)), modified = "2024-06-17 11:07:15", modifiedby = "tobiasko", name = "plotCycleLoad", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2522355, container = list(`_classname` = "order", `_id` = 35373), created = "2024-06-17 11:07:15", createdby = "tobiasko", filechecksum = "554f5059130596829272d37cb4ade694", junk = "false", modified = "2024-06-17 11:07:15", modifiedby = "tobiasko", name = "WU304638-20240617-1107-rawDiag.pdf", relativepath = "container_35373/workunit_304638/WU304638-20240617-1107-rawDiag.pdf", size = "98846", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35373/workunit_304638/WU304638-20240617-1107-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35373/workunit_304638/WU304638-20240617-1107-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304638))) The current plot is available as workunit 304638. Rendering actionButton to link workunit 304638 in B-Fabric. `geom_smooth()` using formula = 'y ~ x' Rendering actionButton to link workunit 304638 in B-Fabric. `geom_smooth()` using formula = 'y ~ x' Rendering actionButton to link workunit 304638 in B-Fabric. plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... `geom_smooth()` using formula = 'y ~ x' Rendering actionButton to link workunit 304638 in B-Fabric. Execution halted