Listening on http://127.0.0.1:46015
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
resourcesSelected: /srv/www/htdocs//p35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_002_S710077_S_1_test.raw
vals$rawfile: /srv/www/htdocs//p35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_002_S710077_S_1_test.raw
reading index for 20240619_C35498_002_S710077_S_1_test.raw...

resourcesSelected: /srv/www/htdocs//p35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_002_S710077_S_1_test.raw
vals$rawfile: /srv/www/htdocs//p35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_002_S710077_S_1_test.raw
Warning: Error in +: non-numeric argument to binary operator
  1: runApp
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
plotScanTime
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_002_S710077_S_1_test.raw
vals$rawfile: /srv/www/htdocs//p35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_002_S710077_S_1_test.raw
reading index for 20240619_C35498_002_S710077_S_1_test.raw...

plotMzDistribution
plotPrecursorHeatmap
plotCycleTime
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'
plotChargeState
saving 'login and webservicepassword' ...
list(list(`_classname` = "workunit", `_id` = 304791, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35498), created = "2024-06-20 09:13:55", createdby = "spfammatter", description = "input files:\np35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_002_S710077_S_1_test.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2524627)), modified = "2024-06-20 09:13:55", modifiedby = "spfammatter", name = "plotChargeState", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2524784, container = list(`_classname` = "order", `_id` = 35498), created = "2024-06-20 09:13:56", createdby = "spfammatter", filechecksum = "d5ba02b3c303f5cb6491a7d9005d5f76", junk = "false", modified = "2024-06-20 09:13:56", modifiedby = "spfammatter", name = "WU304791-20240620-0913-rawDiag.pdf", relativepath = "container_35498/workunit_304791/WU304791-20240620-0913-rawDiag.pdf", size = "6580", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35498/workunit_304791/WU304791-20240620-0913-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35498/workunit_304791/WU304791-20240620-0913-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304791)))
The current plot is available as workunit 304791.
Rendering actionButton to link workunit 304791 in B-Fabric.
saving 'login and webservicepassword' ...
plotTicBasepeak
list(list(`_classname` = "workunit", `_id` = 304792, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35498), created = "2024-06-20 09:14:20", createdby = "spfammatter", description = "input files:\np35498/Proteomics/QEXACTIVE_1/analytic_20240619/20240619_C35498_002_S710077_S_1_test.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2524627)), modified = "2024-06-20 09:14:20", modifiedby = "spfammatter", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2524785, container = list(`_classname` = "order", `_id` = 35498), created = "2024-06-20 09:14:20", createdby = "spfammatter", filechecksum = "e9c32d376fda8b4aaeddd6cec7536d9a", junk = "false", modified = "2024-06-20 09:14:20", modifiedby = "spfammatter", name = "WU304792-20240620-0914-rawDiag.pdf", relativepath = "container_35498/workunit_304792/WU304792-20240620-0914-rawDiag.pdf", size = "107204", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35498/workunit_304792/WU304792-20240620-0914-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35498/workunit_304792/WU304792-20240620-0914-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304792)))
The current plot is available as workunit 304792.
Rendering actionButton to link workunit 304792 in B-Fabric.


Execution halted