Listening on http://127.0.0.1:41533 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotCycleLoad output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_004_S715458_mpa_t80_Xlink1_Treated.raw, /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_002_S715460_mpa_t80_Xlink3_Treated.raw, /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_009_S715456_mpa_t80_noX2_Untreated.raw, /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_005_S715457_mpa_t80_noX3_Untreated.raw, /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_003_S715455_mpa_t80_noX1_Untreated.raw, /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_008_S715459_mpa_t80_Xlink2_Treated.raw vals$rawfile: /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_004_S715458_mpa_t80_Xlink1_Treated.raw, /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_002_S715460_mpa_t80_Xlink3_Treated.raw, /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_009_S715456_mpa_t80_noX2_Untreated.raw, /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_005_S715457_mpa_t80_noX3_Untreated.raw, /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_003_S715455_mpa_t80_noX1_Untreated.raw, /srv/www/htdocs//p35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_008_S715459_mpa_t80_Xlink2_Treated.raw reading index for 20240621_C35572_009_S715456_mpa_t80_noX2_Untreated.raw... reading index for 20240621_C35572_008_S715459_mpa_t80_Xlink2_Treated.raw... reading index for 20240621_C35572_003_S715455_mpa_t80_noX1_Untreated.raw... reading index for 20240621_C35572_002_S715460_mpa_t80_Xlink3_Treated.raw... reading index for 20240621_C35572_005_S715457_mpa_t80_noX3_Untreated.raw... reading index for 20240621_C35572_004_S715458_mpa_t80_Xlink1_Treated.raw... `geom_smooth()` using formula = 'y ~ x' plotTicBasepeak saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 304854, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35572), created = "2024-06-24 09:30:57", createdby = "tobiasko", description = "input files:\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_004_S715458_mpa_t80_Xlink1_Treated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_002_S715460_mpa_t80_Xlink3_Treated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_009_S715456_mpa_t80_noX2_Untreated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_005_S715457_mpa_t80_noX3_Untreated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_003_S715455_mpa_t80_noX1_Untreated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_008_S715459_mpa_t80_Xlink2_Treated.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2528875), list(`_classname` = "resource", `_id` = 2528874), list(`_classname` = "resource", `_id` = 2528873), list(`_classname` = "resource", `_id` = 2528872), list(`_classname` = "resource", `_id` = 2528871), list(`_classname` = "resource", `_id` = 2528870)), modified = "2024-06-24 09:30:57", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2528901, container = list(`_classname` = "order", `_id` = 35572), created = "2024-06-24 09:30:57", createdby = "tobiasko", filechecksum = "e79095862603038c3947112061466797", junk = "false", modified = "2024-06-24 09:30:57", modifiedby = "tobiasko", name = "WU304854-20240624-0930-rawDiag.pdf", relativepath = "container_35572/workunit_304854/WU304854-20240624-0930-rawDiag.pdf", size = "71631", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35572/workunit_304854/WU304854-20240624-0930-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35572/workunit_304854/WU304854-20240624-0930-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304854))) The current plot is available as workunit 304854. Rendering actionButton to link workunit 304854 in B-Fabric. saving 'login and webservicepassword' ... plotMzDistribution Rendering actionButton to link workunit 304854 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 304855, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35572), created = "2024-06-24 09:31:46", createdby = "tobiasko", description = "input files:\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_004_S715458_mpa_t80_Xlink1_Treated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_002_S715460_mpa_t80_Xlink3_Treated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_009_S715456_mpa_t80_noX2_Untreated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_005_S715457_mpa_t80_noX3_Untreated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_003_S715455_mpa_t80_noX1_Untreated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_008_S715459_mpa_t80_Xlink2_Treated.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2528875), list(`_classname` = "resource", `_id` = 2528874), list(`_classname` = "resource", `_id` = 2528873), list(`_classname` = "resource", `_id` = 2528872), list(`_classname` = "resource", `_id` = 2528871), list(`_classname` = "resource", `_id` = 2528870)), modified = "2024-06-24 09:31:46", modifiedby = "tobiasko", name = "plotMzDistribution", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2528905, container = list(`_classname` = "order", `_id` = 35572), created = "2024-06-24 09:31:46", createdby = "tobiasko", filechecksum = "21e48763a2cb44238a47757de15142c6", junk = "false", modified = "2024-06-24 09:31:47", modifiedby = "tobiasko", name = "WU304855-20240624-0931-rawDiag.pdf", relativepath = "container_35572/workunit_304855/WU304855-20240624-0931-rawDiag.pdf", size = "1747527", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35572/workunit_304855/WU304855-20240624-0931-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35572/workunit_304855/WU304855-20240624-0931-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304855))) The current plot is available as workunit 304855. Rendering actionButton to link workunit 304855 in B-Fabric. Warning: Error in : Discrete value supplied to continuous scale 188: stop 187: train_continuous 186: self$range$train 185: train 184: scales[[i]][[method]] 183: FUN 182: lapply 181: FUN 180: lapply 179: scale_apply 178: train_scales 177: self$facet$train_scales 176: train_position 175: layout$train_position 174: ggplot_build.ggplot 172: print.ggplot 167: func 165: f 164: Reduce 155: do 154: hybrid_chain 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp plotLockMassCorrection Rendering actionButton to link workunit 304855 in B-Fabric. plotInjectionTime list(list(`_classname` = "workunit", `_id` = 304856, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35572), created = "2024-06-24 09:32:52", createdby = "tobiasko", description = "input files:\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_004_S715458_mpa_t80_Xlink1_Treated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_002_S715460_mpa_t80_Xlink3_Treated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_009_S715456_mpa_t80_noX2_Untreated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_005_S715457_mpa_t80_noX3_Untreated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_003_S715455_mpa_t80_noX1_Untreated.raw\np35572/Proteomics/LUMOS_2/analytic_20240621/20240621_C35572_008_S715459_mpa_t80_Xlink2_Treated.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2528875), list(`_classname` = "resource", `_id` = 2528874), list(`_classname` = "resource", `_id` = 2528873), list(`_classname` = "resource", `_id` = 2528872), list(`_classname` = "resource", `_id` = 2528871), list(`_classname` = "resource", `_id` = 2528870)), modified = "2024-06-24 09:32:52", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2528906, container = list(`_classname` = "order", `_id` = 35572), created = "2024-06-24 09:32:52", createdby = "tobiasko", filechecksum = "0ff16a3fcb662feb5ec7cd30c5f3695e", junk = "false", modified = "2024-06-24 09:32:52", modifiedby = "tobiasko", name = "WU304856-20240624-0932-rawDiag.pdf", relativepath = "container_35572/workunit_304856/WU304856-20240624-0932-rawDiag.pdf", size = "623868", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35572/workunit_304856/WU304856-20240624-0932-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35572/workunit_304856/WU304856-20240624-0932-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304856))) The current plot is available as workunit 304856. Rendering actionButton to link workunit 304856 in B-Fabric. Rendering actionButton to link workunit 304856 in B-Fabric. Rendering actionButton to link workunit 304856 in B-Fabric. Execution halted