Listening on http://127.0.0.1:34213 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... plotTicBasepeak resourcesSelected: /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_004_S705057_4h_biotin_1_Group_1.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_005_S705060_4h_biotin_4_Group_1.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_002_S705059_4h_biotin_3_Group_1.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_005_S705056_no_botin_4_Control.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_002_S705054_no_biotin_2_Control.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_004_S705053_no_biotin_1_Control.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_003_S705055_no_biotin_3_Control.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_003_S705058_4h_biotin_2_Group_1.raw vals$rawfile: /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_004_S705057_4h_biotin_1_Group_1.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_005_S705060_4h_biotin_4_Group_1.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_002_S705059_4h_biotin_3_Group_1.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_005_S705056_no_botin_4_Control.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_002_S705054_no_biotin_2_Control.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_004_S705053_no_biotin_1_Control.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_003_S705055_no_biotin_3_Control.raw, /srv/www/htdocs//p35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_003_S705058_4h_biotin_2_Group_1.raw reading index for 20240608_C35421_005_S705056_no_botin_4_Control.raw... reading index for 20240608_C35421_002_S705059_4h_biotin_3_Group_1.raw... reading index for 20240608_C35421_004_S705053_no_biotin_1_Control.raw... reading index for 20240624_002_S705054_no_biotin_2_Control.raw... reading index for 20240624_005_S705060_4h_biotin_4_Group_1.raw... reading index for 20240624_004_S705057_4h_biotin_1_Group_1.raw... reading index for 20240624_003_S705055_no_biotin_3_Control.raw... reading index for 20240608_C35421_003_S705058_4h_biotin_2_Group_1.raw... saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 304890, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35421), created = "2024-06-25 10:21:18", createdby = "tobiasko", description = "input files:\np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_004_S705057_4h_biotin_1_Group_1.raw \np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_005_S705060_4h_biotin_4_Group_1.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_002_S705059_4h_biotin_3_Group_1.raw\np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_005_S705056_no_botin_4_Control.raw \np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_002_S705054_no_biotin_2_Control.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_004_S705053_no_biotin_1_Control.raw\np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_003_S705055_no_biotin_3_Control.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_003_S705058_4h_biotin_2_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2529249), list(`_classname` = "resource", `_id` = 2529248), list(`_classname` = "resource", `_id` = 2529247), list(`_classname` = "resource", `_id` = 2529246), list(`_classname` = "resource", `_id` = 2529245), list(`_classname` = "resource", `_id` = 2529244), list(`_classname` = "resource", `_id` = 2529243), list(`_classname` = "resource", `_id` = 2529242)), modified = "2024-06-25 10:21:18", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2529265, container = list(`_classname` = "order", `_id` = 35421), created = "2024-06-25 10:21:18", createdby = "tobiasko", filechecksum = "5a6b7227b3e068fb70941b2547907ef1", junk = "false", modified = "2024-06-25 10:21:18", modifiedby = "tobiasko", name = "WU304890-20240625-1021-rawDiag.pdf", relativepath = "container_35421/workunit_304890/WU304890-20240625-1021-rawDiag.pdf", size = "102784", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35421/workunit_304890/WU304890-20240625-1021-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35421/workunit_304890/WU304890-20240625-1021-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304890))) The current plot is available as workunit 304890. Rendering actionButton to link workunit 304890 in B-Fabric. saving 'login and webservicepassword' ... plotLockMassCorrection Rendering actionButton to link workunit 304890 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 304891, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35421), created = "2024-06-25 10:22:01", createdby = "tobiasko", description = "input files:\np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_004_S705057_4h_biotin_1_Group_1.raw \np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_005_S705060_4h_biotin_4_Group_1.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_002_S705059_4h_biotin_3_Group_1.raw\np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_005_S705056_no_botin_4_Control.raw \np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_002_S705054_no_biotin_2_Control.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_004_S705053_no_biotin_1_Control.raw\np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_003_S705055_no_biotin_3_Control.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_003_S705058_4h_biotin_2_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2529249), list(`_classname` = "resource", `_id` = 2529248), list(`_classname` = "resource", `_id` = 2529247), list(`_classname` = "resource", `_id` = 2529246), list(`_classname` = "resource", `_id` = 2529245), list(`_classname` = "resource", `_id` = 2529244), list(`_classname` = "resource", `_id` = 2529243), list(`_classname` = "resource", `_id` = 2529242)), modified = "2024-06-25 10:22:01", modifiedby = "tobiasko", name = "plotLockMassCorrection", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2529266, container = list(`_classname` = "order", `_id` = 35421), created = "2024-06-25 10:22:02", createdby = "tobiasko", filechecksum = "465f888c2b896c19dce9e211860fef4c", junk = "false", modified = "2024-06-25 10:22:02", modifiedby = "tobiasko", name = "WU304891-20240625-1022-rawDiag.pdf", relativepath = "container_35421/workunit_304891/WU304891-20240625-1022-rawDiag.pdf", size = "53297", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35421/workunit_304891/WU304891-20240625-1022-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35421/workunit_304891/WU304891-20240625-1022-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304891))) The current plot is available as workunit 304891. Rendering actionButton to link workunit 304891 in B-Fabric. plotInjectionTime Rendering actionButton to link workunit 304891 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 304892, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35421), created = "2024-06-25 10:24:00", createdby = "tobiasko", description = "input files:\np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_004_S705057_4h_biotin_1_Group_1.raw \np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_005_S705060_4h_biotin_4_Group_1.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_002_S705059_4h_biotin_3_Group_1.raw\np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_005_S705056_no_botin_4_Control.raw \np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_002_S705054_no_biotin_2_Control.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_004_S705053_no_biotin_1_Control.raw\np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_003_S705055_no_biotin_3_Control.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_003_S705058_4h_biotin_2_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2529249), list(`_classname` = "resource", `_id` = 2529248), list(`_classname` = "resource", `_id` = 2529247), list(`_classname` = "resource", `_id` = 2529246), list(`_classname` = "resource", `_id` = 2529245), list(`_classname` = "resource", `_id` = 2529244), list(`_classname` = "resource", `_id` = 2529243), list(`_classname` = "resource", `_id` = 2529242)), modified = "2024-06-25 10:24:00", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2529267, container = list(`_classname` = "order", `_id` = 35421), created = "2024-06-25 10:24:01", createdby = "tobiasko", filechecksum = "6da75d8d5f68b22e5e37894391c105be", junk = "false", modified = "2024-06-25 10:24:01", modifiedby = "tobiasko", name = "WU304892-20240625-1024-rawDiag.pdf", relativepath = "container_35421/workunit_304892/WU304892-20240625-1024-rawDiag.pdf", size = "942540", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35421/workunit_304892/WU304892-20240625-1024-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35421/workunit_304892/WU304892-20240625-1024-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304892))) The current plot is available as workunit 304892. Rendering actionButton to link workunit 304892 in B-Fabric. plotMzDistribution Rendering actionButton to link workunit 304892 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 304893, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35421), created = "2024-06-25 10:25:19", createdby = "tobiasko", description = "input files:\np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_004_S705057_4h_biotin_1_Group_1.raw \np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_005_S705060_4h_biotin_4_Group_1.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_002_S705059_4h_biotin_3_Group_1.raw\np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_005_S705056_no_botin_4_Control.raw \np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_002_S705054_no_biotin_2_Control.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_004_S705053_no_biotin_1_Control.raw\np35421/Proteomics/EXPLORIS_2/jvornberger_20240624/20240624_003_S705055_no_biotin_3_Control.raw \np35421/Proteomics/EXPLORIS_2/analytic_20240606/20240608_C35421_003_S705058_4h_biotin_2_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2529249), list(`_classname` = "resource", `_id` = 2529248), list(`_classname` = "resource", `_id` = 2529247), list(`_classname` = "resource", `_id` = 2529246), list(`_classname` = "resource", `_id` = 2529245), list(`_classname` = "resource", `_id` = 2529244), list(`_classname` = "resource", `_id` = 2529243), list(`_classname` = "resource", `_id` = 2529242)), modified = "2024-06-25 10:25:19", modifiedby = "tobiasko", name = "plotMzDistribution", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2529268, container = list(`_classname` = "order", `_id` = 35421), created = "2024-06-25 10:25:20", createdby = "tobiasko", filechecksum = "f3cb19dfd86400d32d1ce8bfa2d7fc98", junk = "false", modified = "2024-06-25 10:25:20", modifiedby = "tobiasko", name = "WU304893-20240625-1025-rawDiag.pdf", relativepath = "container_35421/workunit_304893/WU304893-20240625-1025-rawDiag.pdf", size = "2810700", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35421/workunit_304893/WU304893-20240625-1025-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35421/workunit_304893/WU304893-20240625-1025-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 304893))) The current plot is available as workunit 304893. Rendering actionButton to link workunit 304893 in B-Fabric. Rendering actionButton to link workunit 304893 in B-Fabric. Execution halted