Listening on http://127.0.0.1:40671 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_010_S690775_1_seed_minusABA_minusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_004_S690784_10_seed_plusABA_plusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_008_S690779_9_seed_minusABA_minusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_005_S690778_7_seed_minusABA_minusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_007_S690780_2_seed_plusABA_plusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_009_S690783_8_seed_plusABA_plusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_002_S690776_3_seed_minusABA_minusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_005_S690785_10_seed_plusABA_dilutedtest_plusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_015_S690781_4_seed_plusABA_plusABA.raw vals$rawfile: /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_010_S690775_1_seed_minusABA_minusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_004_S690784_10_seed_plusABA_plusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_008_S690779_9_seed_minusABA_minusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_005_S690778_7_seed_minusABA_minusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_007_S690780_2_seed_plusABA_plusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_009_S690783_8_seed_plusABA_plusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_002_S690776_3_seed_minusABA_minusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_005_S690785_10_seed_plusABA_dilutedtest_plusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_015_S690781_4_seed_plusABA_plusABA.raw reading index for 20240513_007_S690780_2_seed_plusABA_plusABA.raw... reading index for 20240513_008_S690779_9_seed_minusABA_minusABA.raw... reading index for 20240513_004_S690784_10_seed_plusABA_plusABA.raw... reading index for 20240513_005_S690778_7_seed_minusABA_minusABA.raw... reading index for 20240513_010_S690775_1_seed_minusABA_minusABA.raw... reading index for 20240513_009_S690783_8_seed_plusABA_plusABA.raw... reading index for 20240513_015_S690781_4_seed_plusABA_plusABA.raw... reading index for 20240513_002_S690776_3_seed_minusABA_minusABA.raw... reading index for 20240513_005_S690785_10_seed_plusABA_dilutedtest_plusABA.raw... plotTicBasepeak saving 'login and webservicepassword' ... plotInjectionTime plotCycleLoad `geom_smooth()` using formula = 'y ~ x' plotLockMassCorrection Warning: Failed to fit group -1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group -1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group -1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group -1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group -1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group -1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group -1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group -1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) plotMzDistribution plotPrecursorHeatmap resourcesSelected: /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_010_S690775_1_seed_minusABA_minusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_004_S690784_10_seed_plusABA_plusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_008_S690779_9_seed_minusABA_minusABA.raw vals$rawfile: /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_010_S690775_1_seed_minusABA_minusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_004_S690784_10_seed_plusABA_plusABA.raw, /srv/www/htdocs//p30061/Proteomics/EXPLORIS_1/bpfister_20240513/20240513_008_S690779_9_seed_minusABA_minusABA.raw reading index for 20240513_008_S690779_9_seed_minusABA_minusABA.raw... reading index for 20240513_004_S690784_10_seed_plusABA_plusABA.raw... reading index for 20240513_010_S690775_1_seed_minusABA_minusABA.raw... plotInjectionTime plotCycleLoad `geom_smooth()` using formula = 'y ~ x' plotChargeState plotLockMassCorrection Warning: Failed to fit group -1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group -1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group -1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) plotMassDistribution plotMzDistribution plotScanTime plotTicBasepeak plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_009_S427188_Glu4_Group_1.raw, /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_003_S427190_GE2_Group_2.raw, /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_004_S427186_Glu2_Group_1.raw vals$rawfile: /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_009_S427188_Glu4_Group_1.raw, /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_003_S427190_GE2_Group_2.raw, /srv/www/htdocs//p26109/Proteomics/LUMOS_1/andreaf_20240621_M3Training/20240621_004_S427186_Glu2_Group_1.raw reading index for 20240621_003_S427190_GE2_Group_2.raw... reading index for 20240621_009_S427188_Glu4_Group_1.raw... reading index for 20240621_004_S427186_Glu2_Group_1.raw... plotTicBasepeak plotCycleTime plotInjectionTime plotPrecursorHeatmap plotChargeState plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/tobiasko_20230724_diatest/20230724_001_autoQC4L.raw, /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/tobiasko_20230724_diatest/20230724_002_autoQC4L.raw, /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/tobiasko_20230724_diatest/20230724_003_autoQC4L.raw vals$rawfile: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/tobiasko_20230724_diatest/20230724_001_autoQC4L.raw, /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/tobiasko_20230724_diatest/20230724_002_autoQC4L.raw, /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/tobiasko_20230724_diatest/20230724_003_autoQC4L.raw reading index for 20230724_002_autoQC4L.raw... reading index for 20230724_003_autoQC4L.raw... reading index for 20230724_001_autoQC4L.raw... plotTicBasepeak plotMassDistribution plotMzDistribution plotPrecursorHeatmap