Listening on http://127.0.0.1:42287
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
plotTicBasepeak
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_003_S733421_GFP-C-4_Control.raw, /srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_010_S733416_AVEN-C-3_Group_1.raw, /srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_005_S733415_AVEN-C-2_Group_1.raw, /srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_009_S733420_GFP-C-3_Control.raw, /srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_004_S733418_GFP-C-1_Control.raw, /srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_011_S733419_GFP-C-2_Control.raw, /srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_002_S733414_AVEN-C-1_Group_1.raw, /srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_008_S733417_AVEN-C-4_Group_1.raw
vals$rawfile: /srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_003_S733421_GFP-C-4_Control.raw,
	/srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_010_S733416_AVEN-C-3_Group_1.raw,
	/srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_005_S733415_AVEN-C-2_Group_1.raw,
	/srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_009_S733420_GFP-C-3_Control.raw,
	/srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_004_S733418_GFP-C-1_Control.raw,
	/srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_011_S733419_GFP-C-2_Control.raw,
	/srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_002_S733414_AVEN-C-1_Group_1.raw,
	/srv/www/htdocs//p35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_008_S733417_AVEN-C-4_Group_1.raw
reading index for 20240718_C35804_002_S733414_AVEN-C-1_Group_1.raw...

reading index for 20240718_C35804_008_S733417_AVEN-C-4_Group_1.raw...

reading index for 20240718_C35804_010_S733416_AVEN-C-3_Group_1.raw...

reading index for 20240718_C35804_011_S733419_GFP-C-2_Control.raw...

reading index for 20240718_C35804_004_S733418_GFP-C-1_Control.raw...

reading index for 20240718_C35804_003_S733421_GFP-C-4_Control.raw...

reading index for 20240718_C35804_009_S733420_GFP-C-3_Control.raw...

reading index for 20240718_C35804_005_S733415_AVEN-C-2_Group_1.raw...

saving 'login and webservicepassword' ...
list(list(`_classname` = "workunit", `_id` = 305897, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35804), created = "2024-07-19 17:07:30", createdby = "heinzmann", description = "input files:\np35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_003_S733421_GFP-C-4_Control.raw \np35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_010_S733416_AVEN-C-3_Group_1.raw\np35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_005_S733415_AVEN-C-2_Group_1.raw\np35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_009_S733420_GFP-C-3_Control.raw \np35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_004_S733418_GFP-C-1_Control.raw \np35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_011_S733419_GFP-C-2_Control.raw \np35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_002_S733414_AVEN-C-1_Group_1.raw\np35804/Proteomics/LUMOS_2/analytic_20240718/20240718_C35804_008_S733417_AVEN-C-4_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2545535), list(`_classname` = "resource", `_id` = 2545534), list(`_classname` = "resource", `_id` = 2545533), list(`_classname` = "resource", `_id` = 2545532), list(`_classname` = "resource", `_id` = 2545531), list(`_classname` = "resource", `_id` = 2545530), list(`_classname` = "resource", `_id` = 2545529), list(`_classname` = "resource", `_id` = 2545528)), modified = "2024-07-19 17:07:30", modifiedby = "heinzmann", 
    name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2545536, container = list(`_classname` = "order", `_id` = 35804), created = "2024-07-19 17:07:31", createdby = "heinzmann", filechecksum = "b671d5baf368edb97c79a2dace8a5ddf", junk = "false", modified = "2024-07-19 17:07:31", modifiedby = "heinzmann", name = "WU305897-20240719-1707-rawDiag.pdf", relativepath = "container_35804/workunit_305897/WU305897-20240719-1707-rawDiag.pdf", size = "753467", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35804/workunit_305897/WU305897-20240719-1707-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35804/workunit_305897/WU305897-20240719-1707-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 305897)))
The current plot is available as workunit 305897.
Rendering actionButton to link workunit 305897 in B-Fabric.
saving 'login and webservicepassword' ...


Execution halted