Listening on http://127.0.0.1:38263 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... plotTicBasepeak resourcesSelected: /srv/www/htdocs//p35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_005_S742703_ss4-2_Group_1.raw, /srv/www/htdocs//p35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_002_S742705_WT-2_Group_2.raw, /srv/www/htdocs//p35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_004_S742704_WT-1_Group_2.raw, /srv/www/htdocs//p35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_001_S742701_Control_Control_rep.raw, /srv/www/htdocs//p35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_003_S742702_ss4-1_Group_1.raw vals$rawfile: /srv/www/htdocs//p35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_005_S742703_ss4-2_Group_1.raw, /srv/www/htdocs//p35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_002_S742705_WT-2_Group_2.raw, /srv/www/htdocs//p35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_004_S742704_WT-1_Group_2.raw, /srv/www/htdocs//p35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_001_S742701_Control_Control_rep.raw, /srv/www/htdocs//p35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_003_S742702_ss4-1_Group_1.raw reading index for 20240724_C35876_002_S742705_WT-2_Group_2.raw... reading index for 20240724_C35876_005_S742703_ss4-2_Group_1.raw... reading index for 20240724_C35876_001_S742701_Control_Control_rep.raw... reading index for 20240724_C35876_003_S742702_ss4-1_Group_1.raw... reading index for 20240724_C35876_004_S742704_WT-1_Group_2.raw... saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 311580, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35876), created = "2024-07-25 09:20:22", createdby = "tobiasko", description = "input files:\np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_005_S742703_ss4-2_Group_1.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_002_S742705_WT-2_Group_2.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_004_S742704_WT-1_Group_2.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_001_S742701_Control_Control_rep.raw\np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_003_S742702_ss4-1_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2600261), list(`_classname` = "resource", `_id` = 2600260), list(`_classname` = "resource", `_id` = 2600259), list(`_classname` = "resource", `_id` = 2600258), list(`_classname` = "resource", `_id` = 2600257)), modified = "2024-07-25 09:20:22", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2600284, container = list(`_classname` = "order", `_id` = 35876), created = "2024-07-25 09:20:22", createdby = "tobiasko", filechecksum = "a9dafc34c0f358ba886bac6017e28deb", junk = "false", modified = "2024-07-25 09:20:22", modifiedby = "tobiasko", name = "WU311580-20240725-0920-rawDiag.pdf", relativepath = "container_35876/workunit_311580/WU311580-20240725-0920-rawDiag.pdf", size = "40817", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35876/workunit_311580/WU311580-20240725-0920-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35876/workunit_311580/WU311580-20240725-0920-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 311580))) The current plot is available as workunit 311580. Rendering actionButton to link workunit 311580 in B-Fabric. saving 'login and webservicepassword' ... plotLockMassCorrection Rendering actionButton to link workunit 311580 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 311581, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35876), created = "2024-07-25 09:20:52", createdby = "tobiasko", description = "input files:\np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_005_S742703_ss4-2_Group_1.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_002_S742705_WT-2_Group_2.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_004_S742704_WT-1_Group_2.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_001_S742701_Control_Control_rep.raw\np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_003_S742702_ss4-1_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2600261), list(`_classname` = "resource", `_id` = 2600260), list(`_classname` = "resource", `_id` = 2600259), list(`_classname` = "resource", `_id` = 2600258), list(`_classname` = "resource", `_id` = 2600257)), modified = "2024-07-25 09:20:52", modifiedby = "tobiasko", name = "plotLockMassCorrection", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2600285, container = list(`_classname` = "order", `_id` = 35876), created = "2024-07-25 09:20:52", createdby = "tobiasko", filechecksum = "ea429a2e2d42257736a7a46da1de4f36", junk = "false", modified = "2024-07-25 09:20:52", modifiedby = "tobiasko", name = "WU311581-20240725-0920-rawDiag.pdf", relativepath = "container_35876/workunit_311581/WU311581-20240725-0920-rawDiag.pdf", size = "20431", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35876/workunit_311581/WU311581-20240725-0920-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35876/workunit_311581/WU311581-20240725-0920-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 311581))) The current plot is available as workunit 311581. Rendering actionButton to link workunit 311581 in B-Fabric. plotInjectionTime Rendering actionButton to link workunit 311581 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 311584, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35876), created = "2024-07-25 09:21:46", createdby = "tobiasko", description = "input files:\np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_005_S742703_ss4-2_Group_1.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_002_S742705_WT-2_Group_2.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_004_S742704_WT-1_Group_2.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_001_S742701_Control_Control_rep.raw\np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_003_S742702_ss4-1_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2600261), list(`_classname` = "resource", `_id` = 2600260), list(`_classname` = "resource", `_id` = 2600259), list(`_classname` = "resource", `_id` = 2600258), list(`_classname` = "resource", `_id` = 2600257)), modified = "2024-07-25 09:21:46", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2600286, container = list(`_classname` = "order", `_id` = 35876), created = "2024-07-25 09:21:46", createdby = "tobiasko", filechecksum = "6f34ddca16c2b24a33858007c6466794", junk = "false", modified = "2024-07-25 09:21:46", modifiedby = "tobiasko", name = "WU311584-20240725-0921-rawDiag.pdf", relativepath = "container_35876/workunit_311584/WU311584-20240725-0921-rawDiag.pdf", size = "469348", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35876/workunit_311584/WU311584-20240725-0921-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35876/workunit_311584/WU311584-20240725-0921-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 311584))) The current plot is available as workunit 311584. Rendering actionButton to link workunit 311584 in B-Fabric. plotPrecursorHeatmap Rendering actionButton to link workunit 311584 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 311587, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35876), created = "2024-07-25 09:23:12", createdby = "tobiasko", description = "input files:\np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_005_S742703_ss4-2_Group_1.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_002_S742705_WT-2_Group_2.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_004_S742704_WT-1_Group_2.raw \np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_001_S742701_Control_Control_rep.raw\np35876/Proteomics/EXPLORIS_1/analytic_20240724/20240724_C35876_003_S742702_ss4-1_Group_1.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2600261), list(`_classname` = "resource", `_id` = 2600260), list(`_classname` = "resource", `_id` = 2600259), list(`_classname` = "resource", `_id` = 2600258), list(`_classname` = "resource", `_id` = 2600257)), modified = "2024-07-25 09:23:12", modifiedby = "tobiasko", name = "plotPrecursorHeatmap", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2600287, container = list(`_classname` = "order", `_id` = 35876), created = "2024-07-25 09:23:12", createdby = "tobiasko", filechecksum = "ce2bc395d0ce006036f52fac8f336dfd", junk = "false", modified = "2024-07-25 09:23:12", modifiedby = "tobiasko", name = "WU311587-20240725-0923-rawDiag.pdf", relativepath = "container_35876/workunit_311587/WU311587-20240725-0923-rawDiag.pdf", size = "564726", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35876/workunit_311587/WU311587-20240725-0923-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35876/workunit_311587/WU311587-20240725-0923-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 311587))) The current plot is available as workunit 311587. Rendering actionButton to link workunit 311587 in B-Fabric.