Listening on http://127.0.0.1:38767 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotMzDistribution output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... plotTicBasepeak saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_008_S745172_MRC-CtrmOx-1_Group_3.raw, /srv/www/htdocs//p35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_002_S745169_MRC-fullOx_Group_1.raw, /srv/www/htdocs//p35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_007_S745171_MRC-NtrmOx-2_Group_2.raw, /srv/www/htdocs//p35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_003_S745170_MRC-NtrmOx-1_Group_2.raw, /srv/www/htdocs//p35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_004_S745173_MRC-CtrmOx-2_Group_3.raw vals$rawfile: /srv/www/htdocs//p35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_008_S745172_MRC-CtrmOx-1_Group_3.raw, /srv/www/htdocs//p35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_002_S745169_MRC-fullOx_Group_1.raw, /srv/www/htdocs//p35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_007_S745171_MRC-NtrmOx-2_Group_2.raw, /srv/www/htdocs//p35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_003_S745170_MRC-NtrmOx-1_Group_2.raw, /srv/www/htdocs//p35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_004_S745173_MRC-CtrmOx-2_Group_3.raw reading index for 20240730_C35947_004_S745173_MRC-CtrmOx-2_Group_3.raw... reading index for 20240730_C35947_003_S745170_MRC-NtrmOx-1_Group_2.raw... reading index for 20240730_C35947_007_S745171_MRC-NtrmOx-2_Group_2.raw... reading index for 20240730_C35947_002_S745169_MRC-fullOx_Group_1.raw... reading index for 20240730_C35947_008_S745172_MRC-CtrmOx-1_Group_3.raw... saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 312797, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35947), created = "2024-07-31 09:39:06", createdby = "tobiasko", description = "input files:\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_008_S745172_MRC-CtrmOx-1_Group_3.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_002_S745169_MRC-fullOx_Group_1.raw \np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_007_S745171_MRC-NtrmOx-2_Group_2.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_003_S745170_MRC-NtrmOx-1_Group_2.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_004_S745173_MRC-CtrmOx-2_Group_3.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2627250), list(`_classname` = "resource", `_id` = 2627249), list(`_classname` = "resource", `_id` = 2627248), list(`_classname` = "resource", `_id` = 2627247), list(`_classname` = "resource", `_id` = 2627246)), modified = "2024-07-31 09:39:06", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2627283, container = list(`_classname` = "order", `_id` = 35947), created = "2024-07-31 09:39:06", createdby = "tobiasko", filechecksum = "4331a1852fedb3442eb46b0183290538", junk = "false", modified = "2024-07-31 09:39:06", modifiedby = "tobiasko", name = "WU312797-20240731-0939-rawDiag.pdf", relativepath = "container_35947/workunit_312797/WU312797-20240731-0939-rawDiag.pdf", size = "65667", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35947/workunit_312797/WU312797-20240731-0939-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35947/workunit_312797/WU312797-20240731-0939-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 312797))) The current plot is available as workunit 312797. Rendering actionButton to link workunit 312797 in B-Fabric. saving 'login and webservicepassword' ... plotLockMassCorrection Rendering actionButton to link workunit 312797 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 312798, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35947), created = "2024-07-31 09:39:29", createdby = "tobiasko", description = "input files:\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_008_S745172_MRC-CtrmOx-1_Group_3.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_002_S745169_MRC-fullOx_Group_1.raw \np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_007_S745171_MRC-NtrmOx-2_Group_2.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_003_S745170_MRC-NtrmOx-1_Group_2.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_004_S745173_MRC-CtrmOx-2_Group_3.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2627250), list(`_classname` = "resource", `_id` = 2627249), list(`_classname` = "resource", `_id` = 2627248), list(`_classname` = "resource", `_id` = 2627247), list(`_classname` = "resource", `_id` = 2627246)), modified = "2024-07-31 09:39:29", modifiedby = "tobiasko", name = "plotLockMassCorrection", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2627284, container = list(`_classname` = "order", `_id` = 35947), created = "2024-07-31 09:39:29", createdby = "tobiasko", filechecksum = "744f6d63d84ccde8d2717a061f59a35e", junk = "false", modified = "2024-07-31 09:39:29", modifiedby = "tobiasko", name = "WU312798-20240731-0939-rawDiag.pdf", relativepath = "container_35947/workunit_312798/WU312798-20240731-0939-rawDiag.pdf", size = "41314", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35947/workunit_312798/WU312798-20240731-0939-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35947/workunit_312798/WU312798-20240731-0939-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 312798))) The current plot is available as workunit 312798. Rendering actionButton to link workunit 312798 in B-Fabric. plotInjectionTime Rendering actionButton to link workunit 312798 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 312799, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35947), created = "2024-07-31 09:40:00", createdby = "tobiasko", description = "input files:\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_008_S745172_MRC-CtrmOx-1_Group_3.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_002_S745169_MRC-fullOx_Group_1.raw \np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_007_S745171_MRC-NtrmOx-2_Group_2.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_003_S745170_MRC-NtrmOx-1_Group_2.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_004_S745173_MRC-CtrmOx-2_Group_3.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2627250), list(`_classname` = "resource", `_id` = 2627249), list(`_classname` = "resource", `_id` = 2627248), list(`_classname` = "resource", `_id` = 2627247), list(`_classname` = "resource", `_id` = 2627246)), modified = "2024-07-31 09:40:00", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2627285, container = list(`_classname` = "order", `_id` = 35947), created = "2024-07-31 09:40:00", createdby = "tobiasko", filechecksum = "3ced95ec1787a185839f1dcb140e415f", junk = "false", modified = "2024-07-31 09:40:00", modifiedby = "tobiasko", name = "WU312799-20240731-0940-rawDiag.pdf", relativepath = "container_35947/workunit_312799/WU312799-20240731-0940-rawDiag.pdf", size = "550715", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35947/workunit_312799/WU312799-20240731-0940-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35947/workunit_312799/WU312799-20240731-0940-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 312799))) The current plot is available as workunit 312799. Rendering actionButton to link workunit 312799 in B-Fabric. plotMassDistribution Rendering actionButton to link workunit 312799 in B-Fabric. plotMzDistribution list(list(`_classname` = "workunit", `_id` = 312800, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35947), created = "2024-07-31 09:40:39", createdby = "tobiasko", description = "input files:\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_008_S745172_MRC-CtrmOx-1_Group_3.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_002_S745169_MRC-fullOx_Group_1.raw \np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_007_S745171_MRC-NtrmOx-2_Group_2.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_003_S745170_MRC-NtrmOx-1_Group_2.raw\np35947/Proteomics/EXPLORIS_2/analytic_20240730/20240730_C35947_004_S745173_MRC-CtrmOx-2_Group_3.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2627250), list(`_classname` = "resource", `_id` = 2627249), list(`_classname` = "resource", `_id` = 2627248), list(`_classname` = "resource", `_id` = 2627247), list(`_classname` = "resource", `_id` = 2627246)), modified = "2024-07-31 09:40:39", modifiedby = "tobiasko", name = "plotMzDistribution", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2627286, container = list(`_classname` = "order", `_id` = 35947), created = "2024-07-31 09:40:40", createdby = "tobiasko", filechecksum = "fce10a82f3166db8b425015e0cfad8a9", junk = "false", modified = "2024-07-31 09:40:40", modifiedby = "tobiasko", name = "WU312800-20240731-0940-rawDiag.pdf", relativepath = "container_35947/workunit_312800/WU312800-20240731-0940-rawDiag.pdf", size = "1745178", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35947/workunit_312800/WU312800-20240731-0940-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35947/workunit_312800/WU312800-20240731-0940-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 312800))) The current plot is available as workunit 312800. Rendering actionButton to link workunit 312800 in B-Fabric. Execution halted