Listening on http://127.0.0.1:44843 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_013_S744280_MFM-X314-B2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_011_S744279_MFM-X314-B1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_004_S744276_MFM-X314-A2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_020_S744283_MFM-X314-C1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_026_S744286_MFM-X314-C4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_008_S744278_MFM-X314-A4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_022_S744284_MFM-X314-C2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_002_S744275_MFM-X314-A1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_024_S744285_MFM-X314-C3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_017_S744282_MFM-X314-B4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_015_S744281_MFM-X314-B3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_006_S744277_MFM-X314-A3_Group_3.raw vals$rawfile: /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_013_S744280_MFM-X314-B2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_011_S744279_MFM-X314-B1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_004_S744276_MFM-X314-A2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_020_S744283_MFM-X314-C1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_026_S744286_MFM-X314-C4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_008_S744278_MFM-X314-A4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_022_S744284_MFM-X314-C2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_002_S744275_MFM-X314-A1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_024_S744285_MFM-X314-C3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_017_S744282_MFM-X314-B4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_015_S744281_MFM-X314-B3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_006_S744277_MFM-X314-A3_Group_3.raw reading index for 20240731_C35916_024_S744285_MFM-X314-C3_Group_3.raw... reading index for 20240731_C35916_026_S744286_MFM-X314-C4_Group_4.raw... reading index for 20240731_C35916_008_S744278_MFM-X314-A4_Group_4.raw... reading index for 20240731_C35916_020_S744283_MFM-X314-C1_Group_1.raw... reading index for 20240731_C35916_013_S744280_MFM-X314-B2_Group_2.raw... reading index for 20240731_C35916_015_S744281_MFM-X314-B3_Group_3.raw... reading index for 20240731_C35916_011_S744279_MFM-X314-B1_Group_1.raw... reading index for 20240731_C35916_006_S744277_MFM-X314-A3_Group_3.raw... reading index for 20240731_C35916_002_S744275_MFM-X314-A1_Group_1.raw... reading index for 20240731_C35916_022_S744284_MFM-X314-C2_Group_2.raw... reading index for 20240731_C35916_017_S744282_MFM-X314-B4_Group_4.raw... reading index for 20240731_C35916_004_S744276_MFM-X314-A2_Group_2.raw... plotTicBasepeak saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 312888, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35916), created = "2024-08-06 10:28:24", createdby = "spfammatter", description = "input files:\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_002_S744275_MFM-X314-A1_Group_1.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_011_S744279_MFM-X314-B1_Group_1.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_020_S744283_MFM-X314-C1_Group_1.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_004_S744276_MFM-X314-A2_Group_2.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_013_S744280_MFM-X314-B2_Group_2.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_022_S744284_MFM-X314-C2_Group_2.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_006_S744277_MFM-X314-A3_Group_3.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_015_S744281_MFM-X314-B3_Group_3.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_024_S744285_MFM-X314-C3_Group_3.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_008_S744278_MFM-X314-A4_Group_4.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_017_S744282_MFM-X314-B4_Group_4.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_026_S744286_MFM-X314-C4_Group_4.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2628505), list(`_classname` = "resource", `_id` = 2628498)), modified = "2024-08-06 10:28:24", modifiedby = "spfammatter", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2628880, container = list(`_classname` = "order", `_id` = 35916), created = "2024-08-06 10:28:25", createdby = "spfammatter", filechecksum = "4fbc690b2b9d73e0536da72e08c54940", junk = "false", modified = "2024-08-06 10:28:25", modifiedby = "spfammatter", name = "WU312888-20240806-1028-rawDiag.pdf", relativepath = "container_35916/workunit_312888/WU312888-20240806-1028-rawDiag.pdf", size = "140176", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35916/workunit_312888/WU312888-20240806-1028-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35916/workunit_312888/WU312888-20240806-1028-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 312888))) The current plot is available as workunit 312888. Rendering actionButton to link workunit 312888 in B-Fabric. saving 'login and webservicepassword' ... Rendering actionButton to link workunit 312888 in B-Fabric. Rendering actionButton to link workunit 312888 in B-Fabric. resourcesSelected: /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_013_S744280_MFM-X314-B2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_011_S744279_MFM-X314-B1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_004_S744276_MFM-X314-A2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_020_S744283_MFM-X314-C1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_026_S744286_MFM-X314-C4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_008_S744278_MFM-X314-A4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_022_S744284_MFM-X314-C2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_002_S744275_MFM-X314-A1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_024_S744285_MFM-X314-C3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_017_S744282_MFM-X314-B4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_015_S744281_MFM-X314-B3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_006_S744277_MFM-X314-A3_Group_3.raw vals$rawfile: /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_013_S744280_MFM-X314-B2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_011_S744279_MFM-X314-B1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_004_S744276_MFM-X314-A2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_020_S744283_MFM-X314-C1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_026_S744286_MFM-X314-C4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_008_S744278_MFM-X314-A4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_022_S744284_MFM-X314-C2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_002_S744275_MFM-X314-A1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_024_S744285_MFM-X314-C3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_017_S744282_MFM-X314-B4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_015_S744281_MFM-X314-B3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_006_S744277_MFM-X314-A3_Group_3.raw Warning: Error in +: non-numeric argument to binary operator 1: runApp plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_013_S744280_MFM-X314-B2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_011_S744279_MFM-X314-B1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_004_S744276_MFM-X314-A2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_020_S744283_MFM-X314-C1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_026_S744286_MFM-X314-C4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_008_S744278_MFM-X314-A4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_022_S744284_MFM-X314-C2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_002_S744275_MFM-X314-A1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_024_S744285_MFM-X314-C3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_017_S744282_MFM-X314-B4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_015_S744281_MFM-X314-B3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_006_S744277_MFM-X314-A3_Group_3.raw vals$rawfile: /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_013_S744280_MFM-X314-B2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_011_S744279_MFM-X314-B1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_004_S744276_MFM-X314-A2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_020_S744283_MFM-X314-C1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_026_S744286_MFM-X314-C4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_008_S744278_MFM-X314-A4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_022_S744284_MFM-X314-C2_Group_2.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_002_S744275_MFM-X314-A1_Group_1.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_024_S744285_MFM-X314-C3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_017_S744282_MFM-X314-B4_Group_4.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_015_S744281_MFM-X314-B3_Group_3.raw, /srv/www/htdocs//p35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_006_S744277_MFM-X314-A3_Group_3.raw reading index for 20240731_C35916_026_S744286_MFM-X314-C4_Group_4.raw... reading index for 20240731_C35916_015_S744281_MFM-X314-B3_Group_3.raw... reading index for 20240731_C35916_011_S744279_MFM-X314-B1_Group_1.raw... reading index for 20240731_C35916_022_S744284_MFM-X314-C2_Group_2.raw... reading index for 20240731_C35916_017_S744282_MFM-X314-B4_Group_4.raw... reading index for 20240731_C35916_013_S744280_MFM-X314-B2_Group_2.raw... reading index for 20240731_C35916_024_S744285_MFM-X314-C3_Group_3.raw... reading index for 20240731_C35916_004_S744276_MFM-X314-A2_Group_2.raw... reading index for 20240731_C35916_020_S744283_MFM-X314-C1_Group_1.raw... reading index for 20240731_C35916_008_S744278_MFM-X314-A4_Group_4.raw... reading index for 20240731_C35916_006_S744277_MFM-X314-A3_Group_3.raw... reading index for 20240731_C35916_002_S744275_MFM-X314-A1_Group_1.raw... saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 312889, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 35916), created = "2024-08-06 10:30:19", createdby = "spfammatter", description = "input files:\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_013_S744280_MFM-X314-B2_Group_2.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_011_S744279_MFM-X314-B1_Group_1.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_004_S744276_MFM-X314-A2_Group_2.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_026_S744286_MFM-X314-C4_Group_4.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_020_S744283_MFM-X314-C1_Group_1.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_008_S744278_MFM-X314-A4_Group_4.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_002_S744275_MFM-X314-A1_Group_1.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_022_S744284_MFM-X314-C2_Group_2.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_024_S744285_MFM-X314-C3_Group_3.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_017_S744282_MFM-X314-B4_Group_4.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_015_S744281_MFM-X314-B3_Group_3.raw\np35916/Proteomics/QEXACTIVE_1/analytic_20240731/20240731_C35916_006_S744277_MFM-X314-A3_Group_3.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2628506), list(`_classname` = "resource", `_id` = 2628505), list(`_classname` = "resource", `_id` = 2628504), list(`_classname` = "resource", `_id` = 2628501), list(`_classname` = "resource", `_id` = 2628498), list(`_classname` = "resource", `_id` = 2628497), list(`_classname` = "resource", `_id` = 2628496), list(`_classname` = "resource", `_id` = 2628495)), modified = "2024-08-06 10:30:19", modifiedby = "spfammatter", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2628884, container = list(`_classname` = "order", `_id` = 35916), created = "2024-08-06 10:30:19", createdby = "spfammatter", filechecksum = "9469a448cdacd4f89fa071c15ef38d49", junk = "false", modified = "2024-08-06 10:30:19", modifiedby = "spfammatter", name = "WU312889-20240806-1030-rawDiag.pdf", relativepath = "container_35916/workunit_312889/WU312889-20240806-1030-rawDiag.pdf", size = "234704", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35916/workunit_312889/WU312889-20240806-1030-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35916/workunit_312889/WU312889-20240806-1030-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 312889))) The current plot is available as workunit 312889. Rendering actionButton to link workunit 312889 in B-Fabric. saving 'login and webservicepassword' ... Execution halted