Listening on http://127.0.0.1:39307
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
resourcesSelected: /srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_007_S753726_MFM-X321-5_Group_2.raw, /srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_004_S753722_MFM-X321-1_Group_1.raw, /srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_008_S753727_MFM-X321-6_Group_2.raw, /srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_009_S753725_MFM-X321-4_Group_2.raw, /srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_003_S753723_MFM-X321-2_Group_1.raw, /srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_002_S753724_MFM-X321-3_Group_1.raw
vals$rawfile: /srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_007_S753726_MFM-X321-5_Group_2.raw,
	/srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_004_S753722_MFM-X321-1_Group_1.raw,
	/srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_008_S753727_MFM-X321-6_Group_2.raw,
	/srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_009_S753725_MFM-X321-4_Group_2.raw,
	/srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_003_S753723_MFM-X321-2_Group_1.raw,
	/srv/www/htdocs//p36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_002_S753724_MFM-X321-3_Group_1.raw
reading index for 20240820_C36090_009_S753725_MFM-X321-4_Group_2.raw...

reading index for 20240820_C36090_002_S753724_MFM-X321-3_Group_1.raw...

reading index for 20240820_C36090_007_S753726_MFM-X321-5_Group_2.raw...

reading index for 20240820_C36090_004_S753722_MFM-X321-1_Group_1.raw...

reading index for 20240820_C36090_008_S753727_MFM-X321-6_Group_2.raw...

reading index for 20240820_C36090_003_S753723_MFM-X321-2_Group_1.raw...

plotTicBasepeak
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
list(list(`_classname` = "workunit", `_id` = 313391, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36090), created = "2024-08-22 09:11:43", createdby = "spfammatter", description = "input files:\np36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_007_S753726_MFM-X321-5_Group_2.raw\np36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_004_S753722_MFM-X321-1_Group_1.raw\np36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_008_S753727_MFM-X321-6_Group_2.raw\np36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_009_S753725_MFM-X321-4_Group_2.raw\np36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_003_S753723_MFM-X321-2_Group_1.raw\np36090/Proteomics/EXPLORIS_1/analytic_20240820/20240820_C36090_002_S753724_MFM-X321-3_Group_1.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2636770), list(`_classname` = "resource", `_id` = 2636769), list(`_classname` = "resource", `_id` = 2636768), list(`_classname` = "resource", `_id` = 2636767), list(`_classname` = "resource", `_id` = 2636766), list(`_classname` = "resource", `_id` = 2636765)), modified = "2024-08-22 09:11:43", modifiedby = "spfammatter", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2636781, container = list(`_classname` = "order", `_id` = 36090), created = "2024-08-22 09:11:43", createdby = "spfammatter", filechecksum = "549f8bd522b3dee5b8e00f7145ab0d6b", junk = "false", modified = "2024-08-22 09:11:43", modifiedby = "spfammatter", name = "WU313391-20240822-0911-rawDiag.pdf", relativepath = "container_36090/workunit_313391/WU313391-20240822-0911-rawDiag.pdf", size = "166566", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36090/workunit_313391/WU313391-20240822-0911-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36090/workunit_313391/WU313391-20240822-0911-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 313391)))
The current plot is available as workunit 313391.
Rendering actionButton to link workunit 313391 in B-Fabric.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.


Execution halted