Listening on http://127.0.0.1:33723
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p36093/Proteomics/LUMOS_2/analytic_20240821/20240821_C36093_004_S753936_Nei09_Natural_isolate_rep.raw, /srv/www/htdocs//p36093/Proteomics/LUMOS_2/analytic_20240821/20240821_C36093_002_S753935_GJV1_Wild_Type__WT_rep.raw
vals$rawfile: /srv/www/htdocs//p36093/Proteomics/LUMOS_2/analytic_20240821/20240821_C36093_004_S753936_Nei09_Natural_isolate_rep.raw,
	/srv/www/htdocs//p36093/Proteomics/LUMOS_2/analytic_20240821/20240821_C36093_002_S753935_GJV1_Wild_Type__WT_rep.raw
reading index for 20240821_C36093_004_S753936_Nei09_Natural_isolate_rep.raw...

reading index for 20240821_C36093_002_S753935_GJV1_Wild_Type__WT_rep.raw...

plotTicBasepeak
saving 'login and webservicepassword' ...
list(list(`_classname` = "workunit", `_id` = 313450, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36093), created = "2024-08-23 10:23:44", createdby = "spfammatter", description = "input files:\np36093/Proteomics/LUMOS_2/analytic_20240821/20240821_C36093_004_S753936_Nei09_Natural_isolate_rep.raw\np36093/Proteomics/LUMOS_2/analytic_20240821/20240821_C36093_002_S753935_GJV1_Wild_Type__WT_rep.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2636873), list(`_classname` = "resource", `_id` = 2636872)), modified = "2024-08-23 10:23:44", modifiedby = "spfammatter", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2637755, container = list(`_classname` = "order", `_id` = 36093), created = "2024-08-23 10:23:45", createdby = "spfammatter", filechecksum = "7db5abcffc45181cbb74631ce3a48223", junk = "false", modified = "2024-08-23 10:23:45", modifiedby = "spfammatter", name = "WU313450-20240823-1023-rawDiag.pdf", relativepath = "container_36093/workunit_313450/WU313450-20240823-1023-rawDiag.pdf", size = "93620", status = "available", storage = list(`_classname` = "storage", 
    `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36093/workunit_313450/WU313450-20240823-1023-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36093/workunit_313450/WU313450-20240823-1023-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 313450)))
The current plot is available as workunit 313450.
Rendering actionButton to link workunit 313450 in B-Fabric.
saving 'login and webservicepassword' ...


Execution halted