Listening on http://127.0.0.1:42111 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_010_S765671_CSF_8_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_008_S751830_CSF_6_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_008_S765669_CSF_6_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_005_S751828_CSF_4_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_004_S765666_CSF_3_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_020_S751823_CSF_7_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_019_S751822_CSF_6_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_007_S765668_CSF_5_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_021_S751824_CSF_8_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_014_S751818_CSF_2_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_003_S751826_CSF_2_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_005_S765667_CSF_4_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_003_S765665_CSF_2_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_010_S751832_CSF_8_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_004_S751827_CSF_3_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_009_S765670_CSF_7_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_009_S751831_CSF_7_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_018_S751821_CSF_5_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_015_S751819_CSF_3_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_013_S751817_CSF_1_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_002_S765664_CSF_1_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_002_S751825_CSF_1_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_016_S751820_CSF_4_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_007_S751829_CSF_5_raw_ENRICH-iST_ENRICH-iST.raw vals$rawfile: /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_010_S765671_CSF_8_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_008_S751830_CSF_6_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_008_S765669_CSF_6_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_005_S751828_CSF_4_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_004_S765666_CSF_3_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_020_S751823_CSF_7_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_019_S751822_CSF_6_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_007_S765668_CSF_5_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_021_S751824_CSF_8_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_014_S751818_CSF_2_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_003_S751826_CSF_2_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_005_S765667_CSF_4_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_003_S765665_CSF_2_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_010_S751832_CSF_8_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_004_S751827_CSF_3_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_009_S765670_CSF_7_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_009_S751831_CSF_7_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_018_S751821_CSF_5_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_015_S751819_CSF_3_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_013_S751817_CSF_1_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_002_S765664_CSF_1_raw_SP3.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_002_S751825_CSF_1_raw_ENRICH-iST_ENRICH-iST.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_016_S751820_CSF_4_raw_iST-BCT_iST-BCT.raw, /srv/www/htdocs//p36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_007_S751829_CSF_5_raw_ENRICH-iST_ENRICH-iST.raw reading index for 20240828_C36073_010_S751832_CSF_8_raw_ENRICH-iST_ENRICH-iST.raw... reading index for 20240828_C36073_021_S751824_CSF_8_raw_iST-BCT_iST-BCT.raw... reading index for 20240828_C36073_004_S765666_CSF_3_raw_SP3.raw... reading index for 20240828_C36073_007_S765668_CSF_5_raw_SP3.raw... reading index for 20240828_C36073_002_S765664_CSF_1_raw_SP3.raw... reading index for 20240828_C36073_015_S751819_CSF_3_raw_iST-BCT_iST-BCT.raw... reading index for 20240828_C36073_005_S765667_CSF_4_raw_SP3.raw... reading index for 20240828_C36073_002_S751825_CSF_1_raw_ENRICH-iST_ENRICH-iST.raw... reading index for 20240828_C36073_013_S751817_CSF_1_raw_iST-BCT_iST-BCT.raw... reading index for 20240828_C36073_009_S765670_CSF_7_raw_SP3.raw... reading index for 20240828_C36073_003_S751826_CSF_2_raw_ENRICH-iST_ENRICH-iST.raw... reading index for 20240828_C36073_016_S751820_CSF_4_raw_iST-BCT_iST-BCT.raw... reading index for 20240828_C36073_010_S765671_CSF_8_raw_SP3.raw... reading index for 20240828_C36073_008_S765669_CSF_6_raw_SP3.raw... reading index for 20240828_C36073_005_S751828_CSF_4_raw_ENRICH-iST_ENRICH-iST.raw... reading index for 20240828_C36073_020_S751823_CSF_7_raw_iST-BCT_iST-BCT.raw... reading index for 20240828_C36073_019_S751822_CSF_6_raw_iST-BCT_iST-BCT.raw... reading index for 20240828_C36073_004_S751827_CSF_3_raw_ENRICH-iST_ENRICH-iST.raw... reading index for 20240828_C36073_009_S751831_CSF_7_raw_ENRICH-iST_ENRICH-iST.raw... reading index for 20240828_C36073_018_S751821_CSF_5_raw_iST-BCT_iST-BCT.raw... reading index for 20240828_C36073_007_S751829_CSF_5_raw_ENRICH-iST_ENRICH-iST.raw... reading index for 20240828_C36073_014_S751818_CSF_2_raw_iST-BCT_iST-BCT.raw... reading index for 20240828_C36073_003_S765665_CSF_2_raw_SP3.raw... reading index for 20240828_C36073_008_S751830_CSF_6_raw_ENRICH-iST_ENRICH-iST.raw... plotTicBasepeak Warning: Error in : One or both dimensions exceed the maximum (50000px). - Use `options(ragg.max_dim = ...)` to change the max Warning: May cause the R session to crash 105: stop 104: get_dims 103: 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp Warning: Error in : One or both dimensions exceed the maximum (50000px). - Use `options(ragg.max_dim = ...)` to change the max Warning: May cause the R session to crash 105: stop 104: get_dims 103: 101: startPNG 100: plotPNG 99: resizeSavedPlot 97: func 95: f 94: Reduce 85: do 84: hybrid_chain 83: renderFunc 82: output$OrbitrapFun02-plot 1: runApp saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 313772, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36073), created = "2024-09-02 20:49:47", createdby = "paolo", description = "input files:\np36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_010_S765671_CSF_8_raw_SP3.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_008_S765669_CSF_6_raw_SP3.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_004_S765666_CSF_3_raw_SP3.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_007_S765668_CSF_5_raw_SP3.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_005_S765667_CSF_4_raw_SP3.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_003_S765665_CSF_2_raw_SP3.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_009_S765670_CSF_7_raw_SP3.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240829/20240828_C36073_002_S765664_CSF_1_raw_SP3.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_020_S751823_CSF_7_raw_iST-BCT_iST-BCT.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_019_S751822_CSF_6_raw_iST-BCT_iST-BCT.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_021_S751824_CSF_8_raw_iST-BCT_iST-BCT.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_014_S751818_CSF_2_raw_iST-BCT_iST-BCT.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_018_S751821_CSF_5_raw_iST-BCT_iST-BCT.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_015_S751819_CSF_3_raw_iST-BCT_iST-BCT.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_013_S751817_CSF_1_raw_iST-BCT_iST-BCT.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_016_S751820_CSF_4_raw_iST-BCT_iST-BCT.raw \np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_008_S751830_CSF_6_raw_ENRICH-iST_ENRICH-iST.raw\np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_005_S751828_CSF_4_raw_ENRICH-iST_ENRICH-iST.raw\np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_003_S751826_CSF_2_raw_ENRICH-iST_ENRICH-iST.raw\np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_004_S751827_CSF_3_raw_ENRICH-iST_ENRICH-iST.raw\np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_010_S751832_CSF_8_raw_ENRICH-iST_ENRICH-iST.raw\np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_009_S751831_CSF_7_raw_ENRICH-iST_ENRICH-iST.raw\np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_002_S751825_CSF_1_raw_ENRICH-iST_ENRICH-iST.raw\np36073/Proteomics/EXPLORIS_2/analytic_20240828/20240828_C36073_007_S751829_CSF_5_raw_ENRICH-iST_ENRICH-iST.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2647157), list(`_classname` = "resource", `_id` = 2647134)), modified = "2024-09-02 20:49:47", modifiedby = "paolo", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2647158, container = list(`_classname` = "order", `_id` = 36073), created = "2024-09-02 20:49:47", createdby = "paolo", filechecksum = "48005aff119bd6ff236d7525a4089348", junk = "false", modified = "2024-09-02 20:49:47", modifiedby = "paolo", name = "WU313772-20240902-2049-rawDiag.pdf", relativepath = "container_36073/workunit_313772/WU313772-20240902-2049-rawDiag.pdf", size = "927914", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36073/workunit_313772/WU313772-20240902-2049-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36073/workunit_313772/WU313772-20240902-2049-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 313772))) The current plot is available as workunit 313772. Rendering actionButton to link workunit 313772 in B-Fabric. saving 'login and webservicepassword' ... Execution halted