Listening on http://127.0.0.1:46165 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_008_S778998_7L_16_weeks_post_tenotomy_Diseased.raw, /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_009_S778996_1L_16_weeks_post_tenotomy_Diseased.raw, /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_007_S778997_2R_16_weeks_post_tenotomy_Control.raw, /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_003_S779001_14R_16_weeks_post_tenotomy_Control.raw, /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_004_S778999_8R_16_weeks_post_tenotomy_Control.raw, /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_005_S779000_13L_16_weeks_post_tenotomy_Diseased.raw vals$rawfile: /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_008_S778998_7L_16_weeks_post_tenotomy_Diseased.raw, /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_009_S778996_1L_16_weeks_post_tenotomy_Diseased.raw, /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_007_S778997_2R_16_weeks_post_tenotomy_Control.raw, /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_003_S779001_14R_16_weeks_post_tenotomy_Control.raw, /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_004_S778999_8R_16_weeks_post_tenotomy_Control.raw, /srv/www/htdocs//p36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_005_S779000_13L_16_weeks_post_tenotomy_Diseased.raw reading index for 20240925_C36388_005_S779000_13L_16_weeks_post_tenotomy_Diseased.raw... reading index for 20240925_C36388_003_S779001_14R_16_weeks_post_tenotomy_Control.raw... reading index for 20240925_C36388_007_S778997_2R_16_weeks_post_tenotomy_Control.raw... reading index for 20240925_C36388_008_S778998_7L_16_weeks_post_tenotomy_Diseased.raw... reading index for 20240925_C36388_009_S778996_1L_16_weeks_post_tenotomy_Diseased.raw... reading index for 20240925_C36388_004_S778999_8R_16_weeks_post_tenotomy_Control.raw... plotTicBasepeak saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 315618, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36388), created = "2024-09-26 11:40:40", createdby = "roschi", description = "input files:\np36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_008_S778998_7L_16_weeks_post_tenotomy_Diseased.raw \np36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_009_S778996_1L_16_weeks_post_tenotomy_Diseased.raw \np36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_007_S778997_2R_16_weeks_post_tenotomy_Control.raw \np36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_003_S779001_14R_16_weeks_post_tenotomy_Control.raw \np36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_004_S778999_8R_16_weeks_post_tenotomy_Control.raw \np36388/Proteomics/EXPLORIS_2/analytic_20240925/20240925_C36388_005_S779000_13L_16_weeks_post_tenotomy_Diseased.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2694236), list(`_classname` = "resource", `_id` = 2694235), list(`_classname` = "resource", `_id` = 2694234), list(`_classname` = "resource", `_id` = 2694233), list(`_classname` = "resource", `_id` = 2694232), list(`_classname` = "resource", `_id` = 2694231)), modified = "2024-09-26 11:40:40", modifiedby = "roschi", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2694241, container = list(`_classname` = "order", `_id` = 36388), created = "2024-09-26 11:40:40", createdby = "roschi", filechecksum = "488339825e7402984cd05c606b1e8062", junk = "false", modified = "2024-09-26 11:40:40", modifiedby = "roschi", name = "WU315618-20240926-1140-rawDiag.pdf", relativepath = "container_36388/workunit_315618/WU315618-20240926-1140-rawDiag.pdf", size = "85341", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36388/workunit_315618/WU315618-20240926-1140-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36388/workunit_315618/WU315618-20240926-1140-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 315618))) The current plot is available as workunit 315618. Rendering actionButton to link workunit 315618 in B-Fabric. saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_023_S588940_1_16w_post_tenetomy_Left_Diseased.raw, /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_007_S588941_2_16w_post_tenetomy_Right_Control.raw, /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_014_S592029_13_16w_post_tenetomy_Left_Diseased.raw, /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_004_S592024_8_16w_post_tenetomy_Right_Control.raw, /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_009_S592030_14_16w_post_tenetomy_Right_Control.raw, /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_016_S592023_7_16w_post_tenetomy_Left_Diseased.raw vals$rawfile: /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_023_S588940_1_16w_post_tenetomy_Left_Diseased.raw, /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_007_S588941_2_16w_post_tenetomy_Right_Control.raw, /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_014_S592029_13_16w_post_tenetomy_Left_Diseased.raw, /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_004_S592024_8_16w_post_tenetomy_Right_Control.raw, /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_009_S592030_14_16w_post_tenetomy_Right_Control.raw, /srv/www/htdocs//p33402/Proteomics/EXPLORIS_2/analytic_20231122/20231122_C33402_016_S592023_7_16w_post_tenetomy_Left_Diseased.raw reading index for 20231122_C33402_016_S592023_7_16w_post_tenetomy_Left_Diseased.raw... reading index for 20231122_C33402_014_S592029_13_16w_post_tenetomy_Left_Diseased.raw... reading index for 20231122_C33402_004_S592024_8_16w_post_tenetomy_Right_Control.raw... reading index for 20231122_C33402_007_S588941_2_16w_post_tenetomy_Right_Control.raw... reading index for 20231122_C33402_009_S592030_14_16w_post_tenetomy_Right_Control.raw... reading index for 20231122_C33402_023_S588940_1_16w_post_tenetomy_Left_Diseased.raw... list(list(errorreport = "Container 33402 is not extensible!"))list(list(errorreport = "No value specified for workunitid!")) The current plot is available as workunit . plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_004_S777856_MS2_wtpep_Wild_Type__WT.raw, /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_002_S777855_MS2_beads_Control_3ul.raw, /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_006_S777857_MS2_mutpep_Mutant.raw vals$rawfile: /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_004_S777856_MS2_wtpep_Wild_Type__WT.raw, /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_002_S777855_MS2_beads_Control_3ul.raw, /srv/www/htdocs//p36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_006_S777857_MS2_mutpep_Mutant.raw reading index for 20240925_C36374_006_S777857_MS2_mutpep_Mutant.raw... reading index for 20240925_C36374_004_S777856_MS2_wtpep_Wild_Type__WT.raw... reading index for 20240925_C36374_002_S777855_MS2_beads_Control_3ul.raw... plotTicBasepeak saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 315638, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36374), created = "2024-09-26 15:06:59", createdby = "tobiasko", description = "input files:\np36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_004_S777856_MS2_wtpep_Wild_Type__WT.raw\np36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_002_S777855_MS2_beads_Control_3ul.raw \np36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_006_S777857_MS2_mutpep_Mutant.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2694345), list(`_classname` = "resource", `_id` = 2694344), list(`_classname` = "resource", `_id` = 2694343)), modified = "2024-09-26 15:06:59", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2694362, container = list(`_classname` = "order", `_id` = 36374), created = "2024-09-26 15:06:59", createdby = "tobiasko", filechecksum = "f70ec556489ff377c5b30121301c27dc", junk = "false", modified = "2024-09-26 15:06:59", modifiedby = "tobiasko", name = "WU315638-20240926-1506-rawDiag.pdf", relativepath = "container_36374/workunit_315638/WU315638-20240926-1506-rawDiag.pdf", size = "38821", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36374/workunit_315638/WU315638-20240926-1506-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36374/workunit_315638/WU315638-20240926-1506-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 315638))) The current plot is available as workunit 315638. Rendering actionButton to link workunit 315638 in B-Fabric. saving 'login and webservicepassword' ... plotScanTime plotMzDistribution plotMassDistribution plotLockMassCorrection Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) plotInjectionTime list(list(`_classname` = "workunit", `_id` = 315639, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36374), created = "2024-09-26 15:08:34", createdby = "tobiasko", description = "input files:\np36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_004_S777856_MS2_wtpep_Wild_Type__WT.raw\np36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_002_S777855_MS2_beads_Control_3ul.raw \np36374/Proteomics/LUMOS_2/analytic_20240925/20240925_C36374_006_S777857_MS2_mutpep_Mutant.raw \n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2694345), list(`_classname` = "resource", `_id` = 2694344), list(`_classname` = "resource", `_id` = 2694343)), modified = "2024-09-26 15:08:34", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2694363, container = list(`_classname` = "order", `_id` = 36374), created = "2024-09-26 15:08:34", createdby = "tobiasko", filechecksum = "eda3378c2e9590f6692ebf841965bf83", junk = "false", modified = "2024-09-26 15:08:34", modifiedby = "tobiasko", name = "WU315639-20240926-1508-rawDiag.pdf", relativepath = "container_36374/workunit_315639/WU315639-20240926-1508-rawDiag.pdf", size = "304301", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36374/workunit_315639/WU315639-20240926-1508-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36374/workunit_315639/WU315639-20240926-1508-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 315639))) The current plot is available as workunit 315639. Rendering actionButton to link workunit 315639 in B-Fabric. plotChargeState plotTicBasepeak plotTicBasepeak output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... resourcesSelected: /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_008_S779172_WT_sync_r1_Treated.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_007_S779173_WT_sync_r2_Treated.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_004_S779174_WT_sync_r3_Treated.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_009_S779179_KO_sync_r2_Control_treated.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_005_S779178_KO_sync_r1_Control_treated.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_003_S779180_KO_sync_r3_Control_treated.raw vals$rawfile: /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_008_S779172_WT_sync_r1_Treated.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_007_S779173_WT_sync_r2_Treated.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_004_S779174_WT_sync_r3_Treated.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_009_S779179_KO_sync_r2_Control_treated.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_005_S779178_KO_sync_r1_Control_treated.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_003_S779180_KO_sync_r3_Control_treated.raw reading index for 20240926_C36395_008_S779172_WT_sync_r1_Treated.raw... reading index for 20240926_C36395_009_S779179_KO_sync_r2_Control_treated.raw... reading index for 20240926_C36395_005_S779178_KO_sync_r1_Control_treated.raw... reading index for 20240926_C36395_004_S779174_WT_sync_r3_Treated.raw... reading index for 20240926_C36395_003_S779180_KO_sync_r3_Control_treated.raw... reading index for 20240926_C36395_007_S779173_WT_sync_r2_Treated.raw... list(list(`_classname` = "workunit", `_id` = 315741, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36395), created = "2024-09-30 11:58:02", createdby = "tobiasko", description = "input files:\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_008_S779172_WT_sync_r1_Treated.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_007_S779173_WT_sync_r2_Treated.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_004_S779174_WT_sync_r3_Treated.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_009_S779179_KO_sync_r2_Control_treated.raw\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_005_S779178_KO_sync_r1_Control_treated.raw\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_003_S779180_KO_sync_r3_Control_treated.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2696253), list(`_classname` = "resource", `_id` = 2696252), list(`_classname` = "resource", `_id` = 2696251), list(`_classname` = "resource", `_id` = 2696250), list(`_classname` = "resource", `_id` = 2696249), list(`_classname` = "resource", `_id` = 2696248)), modified = "2024-09-30 11:58:02", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2696272, container = list(`_classname` = "order", `_id` = 36395), created = "2024-09-30 11:58:03", createdby = "tobiasko", filechecksum = "4224948057315b6f642e7410823f24c5", junk = "false", modified = "2024-09-30 11:58:03", modifiedby = "tobiasko", name = "WU315741-20240930-1158-rawDiag.pdf", relativepath = "container_36395/workunit_315741/WU315741-20240930-1158-rawDiag.pdf", size = "68695", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36395/workunit_315741/WU315741-20240930-1158-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36395/workunit_315741/WU315741-20240930-1158-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 315741))) The current plot is available as workunit 315741. Rendering actionButton to link workunit 315741 in B-Fabric. plotInjectionTime list(list(`_classname` = "workunit", `_id` = 315742, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36395), created = "2024-09-30 11:58:34", createdby = "tobiasko", description = "input files:\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_008_S779172_WT_sync_r1_Treated.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_007_S779173_WT_sync_r2_Treated.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_004_S779174_WT_sync_r3_Treated.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_009_S779179_KO_sync_r2_Control_treated.raw\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_005_S779178_KO_sync_r1_Control_treated.raw\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_003_S779180_KO_sync_r3_Control_treated.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2696253), list(`_classname` = "resource", `_id` = 2696252), list(`_classname` = "resource", `_id` = 2696251), list(`_classname` = "resource", `_id` = 2696250), list(`_classname` = "resource", `_id` = 2696249), list(`_classname` = "resource", `_id` = 2696248)), modified = "2024-09-30 11:58:34", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2696273, container = list(`_classname` = "order", `_id` = 36395), created = "2024-09-30 11:58:34", createdby = "tobiasko", filechecksum = "4363c2cd9cc69bacaa2a346b8fec52bb", junk = "false", modified = "2024-09-30 11:58:35", modifiedby = "tobiasko", name = "WU315742-20240930-1158-rawDiag.pdf", relativepath = "container_36395/workunit_315742/WU315742-20240930-1158-rawDiag.pdf", size = "625679", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36395/workunit_315742/WU315742-20240930-1158-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36395/workunit_315742/WU315742-20240930-1158-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 315742))) The current plot is available as workunit 315742. Rendering actionButton to link workunit 315742 in B-Fabric. plotLockMassCorrection Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) plotMzDistribution plotTicBasepeak resourcesSelected: /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_002_S779171_WT_unsync_r3_Wild_Type__WT_.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_007_S779170_WT_unsync_r2_Wild_Type__WT_.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_008_S779176_KO_unsync_r2_Empty_Vector__EV_.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_006_S779175_KO_unsync_r1_Empty_Vector__EV_.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_004_S779169_WT_unsync_r1_Wild_Type__WT_.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_003_S779177_KO_unsync_r3_Empty_Vector__EV_.raw vals$rawfile: /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_002_S779171_WT_unsync_r3_Wild_Type__WT_.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_007_S779170_WT_unsync_r2_Wild_Type__WT_.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_008_S779176_KO_unsync_r2_Empty_Vector__EV_.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_006_S779175_KO_unsync_r1_Empty_Vector__EV_.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_004_S779169_WT_unsync_r1_Wild_Type__WT_.raw, /srv/www/htdocs//p36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_003_S779177_KO_unsync_r3_Empty_Vector__EV_.raw reading index for 20240926_C36395_003_S779177_KO_unsync_r3_Empty_Vector__EV_.raw... reading index for 20240926_C36395_006_S779175_KO_unsync_r1_Empty_Vector__EV_.raw... reading index for 20240926_C36395_004_S779169_WT_unsync_r1_Wild_Type__WT_.raw... reading index for 20240926_C36395_007_S779170_WT_unsync_r2_Wild_Type__WT_.raw... reading index for 20240926_C36395_008_S779176_KO_unsync_r2_Empty_Vector__EV_.raw... reading index for 20240926_C36395_002_S779171_WT_unsync_r3_Wild_Type__WT_.raw... list(list(`_classname` = "workunit", `_id` = 315743, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36395), created = "2024-09-30 12:00:37", createdby = "tobiasko", description = "input files:\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_002_S779171_WT_unsync_r3_Wild_Type__WT_.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_007_S779170_WT_unsync_r2_Wild_Type__WT_.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_008_S779176_KO_unsync_r2_Empty_Vector__EV_.raw\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_006_S779175_KO_unsync_r1_Empty_Vector__EV_.raw\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_004_S779169_WT_unsync_r1_Wild_Type__WT_.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_003_S779177_KO_unsync_r3_Empty_Vector__EV_.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2696247), list(`_classname` = "resource", `_id` = 2696246), list(`_classname` = "resource", `_id` = 2696245), list(`_classname` = "resource", `_id` = 2696244), list(`_classname` = "resource", `_id` = 2696243), list(`_classname` = "resource", `_id` = 2696242)), modified = "2024-09-30 12:00:37", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2696274, container = list(`_classname` = "order", `_id` = 36395), created = "2024-09-30 12:00:38", createdby = "tobiasko", filechecksum = "6639bb36ebaf2deeecf14c02b89d7cce", junk = "false", modified = "2024-09-30 12:00:38", modifiedby = "tobiasko", name = "WU315743-20240930-1200-rawDiag.pdf", relativepath = "container_36395/workunit_315743/WU315743-20240930-1200-rawDiag.pdf", size = "64954", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36395/workunit_315743/WU315743-20240930-1200-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36395/workunit_315743/WU315743-20240930-1200-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 315743))) The current plot is available as workunit 315743. Rendering actionButton to link workunit 315743 in B-Fabric. plotInjectionTime list(list(`_classname` = "workunit", `_id` = 315744, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36395), created = "2024-09-30 12:01:07", createdby = "tobiasko", description = "input files:\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_002_S779171_WT_unsync_r3_Wild_Type__WT_.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_007_S779170_WT_unsync_r2_Wild_Type__WT_.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_008_S779176_KO_unsync_r2_Empty_Vector__EV_.raw\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_006_S779175_KO_unsync_r1_Empty_Vector__EV_.raw\np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_004_S779169_WT_unsync_r1_Wild_Type__WT_.raw \np36395/Proteomics/LUMOS_2/analytic_20240926/20240926_C36395_003_S779177_KO_unsync_r3_Empty_Vector__EV_.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2696247), list(`_classname` = "resource", `_id` = 2696246), list(`_classname` = "resource", `_id` = 2696245), list(`_classname` = "resource", `_id` = 2696244), list(`_classname` = "resource", `_id` = 2696243), list(`_classname` = "resource", `_id` = 2696242)), modified = "2024-09-30 12:01:07", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2696275, container = list(`_classname` = "order", `_id` = 36395), created = "2024-09-30 12:01:08", createdby = "tobiasko", filechecksum = "8d691760dd1a1a866fca2465b91c85d7", junk = "false", modified = "2024-09-30 12:01:08", modifiedby = "tobiasko", name = "WU315744-20240930-1201-rawDiag.pdf", relativepath = "container_36395/workunit_315744/WU315744-20240930-1201-rawDiag.pdf", size = "619577", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36395/workunit_315744/WU315744-20240930-1201-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36395/workunit_315744/WU315744-20240930-1201-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 315744))) The current plot is available as workunit 315744. Rendering actionButton to link workunit 315744 in B-Fabric. plotLockMassCorrection Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) plotChargeState plotMassDistribution plotPrecursorHeatmap plotMzDistribution Execution halted