Listening on http://127.0.0.1:33135
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric13-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric13-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric13-employee
    1: runApp
Warning: Error in .read: B-Fabric errorreport: Invalid login or password. Could not login.
  163: stop
  162: .read
  161: bfabricShiny::readPages
  160: eventReactiveValueFunc
  116: bfabricConnectionWorking
  114: <reactive>
   98: empdegree
   97: renderUI
   96: func
   83: renderFunc
   82: output$bfabric13-employee
    1: runApp
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
saving 'login and webservicepassword' ...
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
resourcesSelected: /srv/www/htdocs//p35852/Proteomics/FUSION_2/analytic_20240723/20240723_C35852_008_S735876_InC01_5_N281A_CHO.raw
vals$rawfile: /srv/www/htdocs//p35852/Proteomics/FUSION_2/analytic_20240723/20240723_C35852_008_S735876_InC01_5_N281A_CHO.raw
reading index for 20240723_C35852_008_S735876_InC01_5_N281A_CHO.raw...

Warning: Failed to fit group 1.
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
plotLockMassCorrection
Warning: Failed to fit group 1.
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
plotMzDistribution
plotMassDistribution
plotTicBasepeak
plotCycleTime
plotInjectionTime
plotMzDistribution
plotPrecursorHeatmap
plotMassDistribution
resourcesSelected: 
vals$rawfile: 
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
resourcesSelected: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw
vals$rawfile: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw
reading index for 20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw...

plotInjectionTime
plotTicBasepeak
resourcesSelected: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw
vals$rawfile: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw
plotInjectionTime
plotLockMassCorrection
Warning: Failed to fit group 1.
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
plotChargeState
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw, /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_inclusion.raw, /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF.raw
vals$rawfile: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw,
	/srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_inclusion.raw,
	/srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF.raw
reading index for 20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw...

reading index for 20240917_002_S774453_02-05-PD-L0-ETD_inclusion.raw...

reading index for 20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF.raw...

resourcesSelected: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw, /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_inclusion.raw, /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF.raw
vals$rawfile: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw,
	/srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_inclusion.raw,
	/srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF.raw
resourcesSelected: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw, /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_inclusion.raw, /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF.raw
vals$rawfile: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw,
	/srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_inclusion.raw,
	/srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF.raw
plotMzDistribution
plotChargeState
plotCycleLoad
`geom_smooth()` using formula = 'y ~ x'
plotCycleTime
plotInjectionTime
plotLockMassCorrection
Warning: Failed to fit group 1.
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
Warning: Failed to fit group 1.
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
Warning: Failed to fit group 1.
Caused by error in `gam.reparam()`:
! NA/NaN/Inf in foreign function call (arg 3)
plotMassDistribution
plotMzDistribution
plotPrecursorHeatmap
saving 'login and webservicepassword' ...
Warning in .read(login, webservicepassword, endpoint = endpoint, query = query,  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  1: runApp
plotPrecursorHeatmap
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw, /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_inclusion.raw, /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF.raw
vals$rawfile: /srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw,
	/srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_inclusion.raw,
	/srv/www/htdocs//p35849/Proteomics/FUSION_2/beffinger_20240917/20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF.raw
reading index for 20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF_ETDIT.raw...

reading index for 20240917_002_S774453_02-05-PD-L0-ETD_inclusion.raw...

reading index for 20240917_002_S774453_02-05-PD-L0-ETD_PNGaseF.raw...



Execution halted
Warning message:
agg could not write to the given file