Listening on http://127.0.0.1:40219 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotChargeState output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... plotTicBasepeak resourcesSelected: /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_018_S822797_EGFP-CoV2_3_Group_3.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_012_S822799_EGFP-mock_2_Group_4.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_016_S822794_IRE1-mock_3_Group_2.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_019_S822796_EGFP-CoV2_2_Group_3.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_011_S822793_IRE1-mock_2_Group_2.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_005_S822795_EGFP-CoV2_1_Group_3.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_007_S822791_IRE1-CoV2_3_Group_1.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_004_S822790_IRE1-CoV2_2_Group_1.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_013_S822798_EGFP-mock_1_Group_4.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_006_S822800_EGFP-mock_3_Group_4.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_010_S822789_IRE1-CoV2_1_Group_1.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_017_S822792_IRE1-mock_1_Group_2.raw vals$rawfile: /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_018_S822797_EGFP-CoV2_3_Group_3.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_012_S822799_EGFP-mock_2_Group_4.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_016_S822794_IRE1-mock_3_Group_2.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_019_S822796_EGFP-CoV2_2_Group_3.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_011_S822793_IRE1-mock_2_Group_2.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_005_S822795_EGFP-CoV2_1_Group_3.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_007_S822791_IRE1-CoV2_3_Group_1.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_004_S822790_IRE1-CoV2_2_Group_1.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_013_S822798_EGFP-mock_1_Group_4.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_006_S822800_EGFP-mock_3_Group_4.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_010_S822789_IRE1-CoV2_1_Group_1.raw, /srv/www/htdocs//p36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_017_S822792_IRE1-mock_1_Group_2.raw reading index for 20241101_C36731_019_S822796_EGFP-CoV2_2_Group_3.raw... reading index for 20241101_C36731_011_S822793_IRE1-mock_2_Group_2.raw... reading index for 20241101_C36731_013_S822798_EGFP-mock_1_Group_4.raw... reading index for 20241101_C36731_012_S822799_EGFP-mock_2_Group_4.raw... reading index for 20241101_C36731_016_S822794_IRE1-mock_3_Group_2.raw... reading index for 20241101_C36731_006_S822800_EGFP-mock_3_Group_4.raw... reading index for 20241101_C36731_017_S822792_IRE1-mock_1_Group_2.raw... reading index for 20241101_C36731_018_S822797_EGFP-CoV2_3_Group_3.raw... reading index for 20241101_C36731_005_S822795_EGFP-CoV2_1_Group_3.raw... reading index for 20241101_C36731_010_S822789_IRE1-CoV2_1_Group_1.raw... reading index for 20241101_C36731_004_S822790_IRE1-CoV2_2_Group_1.raw... reading index for 20241101_C36731_007_S822791_IRE1-CoV2_3_Group_1.raw... saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 316829, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36731), created = "2024-11-04 09:35:21", createdby = "tobiasko", description = "input files:\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_018_S822797_EGFP-CoV2_3_Group_3.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_012_S822799_EGFP-mock_2_Group_4.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_016_S822794_IRE1-mock_3_Group_2.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_019_S822796_EGFP-CoV2_2_Group_3.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_011_S822793_IRE1-mock_2_Group_2.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_005_S822795_EGFP-CoV2_1_Group_3.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_007_S822791_IRE1-CoV2_3_Group_1.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_004_S822790_IRE1-CoV2_2_Group_1.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_013_S822798_EGFP-mock_1_Group_4.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_006_S822800_EGFP-mock_3_Group_4.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_010_S822789_IRE1-CoV2_1_Group_1.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_017_S822792_IRE1-mock_1_Group_2.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2713281), list(`_classname` = "resource", `_id` = 2713280), list(`_classname` = "resource", `_id` = 2713279), list(`_classname` = "resource", `_id` = 2713278), list(`_classname` = "resource", `_id` = 2713277), list(`_classname` = "resource", `_id` = 2713276), list(`_classname` = "resource", `_id` = 2713275), list(`_classname` = "resource", `_id` = 2713274), list(`_classname` = "resource", `_id` = 2713273), list( `_classname` = "resource", `_id` = 2713272), list(`_classname` = "resource", `_id` = 2713271), list(`_classname` = "resource", `_id` = 2713270)), modified = "2024-11-04 09:35:21", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2713298, container = list(`_classname` = "order", `_id` = 36731), created = "2024-11-04 09:35:22", createdby = "tobiasko", filechecksum = "7fa20ba201d1e4195e982f40864088e2", junk = "false", modified = "2024-11-04 09:35:22", modifiedby = "tobiasko", name = "WU316829-20241104-0935-rawDiag.pdf", relativepath = "container_36731/workunit_316829/WU316829-20241104-0935-rawDiag.pdf", size = "87770", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36731/workunit_316829/WU316829-20241104-0935-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36731/workunit_316829/WU316829-20241104-0935-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 316829))) The current plot is available as workunit 316829. Rendering actionButton to link workunit 316829 in B-Fabric. saving 'login and webservicepassword' ... Rendering actionButton to link workunit 316829 in B-Fabric. Rendering actionButton to link workunit 316829 in B-Fabric. Rendering actionButton to link workunit 316829 in B-Fabric. Rendering actionButton to link workunit 316829 in B-Fabric. plotLockMassCorrection Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) Warning: Failed to fit group 1. Caused by error in `gam.reparam()`: ! NA/NaN/Inf in foreign function call (arg 3) plotInjectionTime list(list(`_classname` = "workunit", `_id` = 316830, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36731), created = "2024-11-04 09:37:56", createdby = "tobiasko", description = "input files:\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_018_S822797_EGFP-CoV2_3_Group_3.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_012_S822799_EGFP-mock_2_Group_4.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_016_S822794_IRE1-mock_3_Group_2.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_019_S822796_EGFP-CoV2_2_Group_3.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_011_S822793_IRE1-mock_2_Group_2.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_005_S822795_EGFP-CoV2_1_Group_3.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_007_S822791_IRE1-CoV2_3_Group_1.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_004_S822790_IRE1-CoV2_2_Group_1.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_013_S822798_EGFP-mock_1_Group_4.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_006_S822800_EGFP-mock_3_Group_4.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_010_S822789_IRE1-CoV2_1_Group_1.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_017_S822792_IRE1-mock_1_Group_2.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2713281), list(`_classname` = "resource", `_id` = 2713280), list(`_classname` = "resource", `_id` = 2713279), list(`_classname` = "resource", `_id` = 2713278), list(`_classname` = "resource", `_id` = 2713277), list(`_classname` = "resource", `_id` = 2713276), list(`_classname` = "resource", `_id` = 2713275), list(`_classname` = "resource", `_id` = 2713274), list(`_classname` = "resource", `_id` = 2713273), list( `_classname` = "resource", `_id` = 2713272), list(`_classname` = "resource", `_id` = 2713271), list(`_classname` = "resource", `_id` = 2713270)), modified = "2024-11-04 09:37:56", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2713299, container = list(`_classname` = "order", `_id` = 36731), created = "2024-11-04 09:37:57", createdby = "tobiasko", filechecksum = "25d42fdf9b3947e088590192e41f7841", junk = "false", modified = "2024-11-04 09:37:57", modifiedby = "tobiasko", name = "WU316830-20241104-0937-rawDiag.pdf", relativepath = "container_36731/workunit_316830/WU316830-20241104-0937-rawDiag.pdf", size = "1201469", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36731/workunit_316830/WU316830-20241104-0937-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36731/workunit_316830/WU316830-20241104-0937-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 316830))) The current plot is available as workunit 316830. Rendering actionButton to link workunit 316830 in B-Fabric. plotMzDistribution list(list(`_classname` = "workunit", `_id` = 316831, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36731), created = "2024-11-04 09:39:29", createdby = "tobiasko", description = "input files:\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_018_S822797_EGFP-CoV2_3_Group_3.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_012_S822799_EGFP-mock_2_Group_4.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_016_S822794_IRE1-mock_3_Group_2.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_019_S822796_EGFP-CoV2_2_Group_3.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_011_S822793_IRE1-mock_2_Group_2.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_005_S822795_EGFP-CoV2_1_Group_3.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_007_S822791_IRE1-CoV2_3_Group_1.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_004_S822790_IRE1-CoV2_2_Group_1.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_013_S822798_EGFP-mock_1_Group_4.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_006_S822800_EGFP-mock_3_Group_4.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_010_S822789_IRE1-CoV2_1_Group_1.raw\np36731/Proteomics/LUMOS_2/analytic_20241101/20241101_C36731_017_S822792_IRE1-mock_1_Group_2.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2713281), list(`_classname` = "resource", `_id` = 2713280), list(`_classname` = "resource", `_id` = 2713279), list(`_classname` = "resource", `_id` = 2713278), list(`_classname` = "resource", `_id` = 2713277), list(`_classname` = "resource", `_id` = 2713276), list(`_classname` = "resource", `_id` = 2713275), list(`_classname` = "resource", `_id` = 2713274), list(`_classname` = "resource", `_id` = 2713273), list( `_classname` = "resource", `_id` = 2713272), list(`_classname` = "resource", `_id` = 2713271), list(`_classname` = "resource", `_id` = 2713270)), modified = "2024-11-04 09:39:29", modifiedby = "tobiasko", name = "plotMzDistribution", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2713300, container = list(`_classname` = "order", `_id` = 36731), created = "2024-11-04 09:39:30", createdby = "tobiasko", filechecksum = "cd1e7138f633823ce2ff1730934be3f9", junk = "false", modified = "2024-11-04 09:39:30", modifiedby = "tobiasko", name = "WU316831-20241104-0939-rawDiag.pdf", relativepath = "container_36731/workunit_316831/WU316831-20241104-0939-rawDiag.pdf", size = "3516826", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36731/workunit_316831/WU316831-20241104-0939-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36731/workunit_316831/WU316831-20241104-0939-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 316831))) The current plot is available as workunit 316831. Rendering actionButton to link workunit 316831 in B-Fabric. Execution halted