Listening on http://127.0.0.1:39455 Loading required package: rawDiag Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save plotMzDistribution output$employee <- renderUI({ read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Warning in .read(login = login, webservicepassword = webservicepassword, : query failed. bfabricConnectionWorking FALSE saving 'login and webservicepassword' ... output$employee <- renderUI({ bfabricConnectionWorking TRUE 'empdegree' found. saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... plotTicBasepeak resourcesSelected: /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_014_S823704_WT-3-C_Group_3.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_004_S823696_WT-1_Group_1.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_009_S823708_W-1-NU_Group_5.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_019_S823712_M-2-NU_Group_6.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_017_S823702_WT-1-C_Group_3.raw, 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/srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_006_S823709_W-2-NU_Group_5.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_003_S823703_WT-2-C_Group_3.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_018_S823700_M-2_Group_2.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_013_S823711_M-1-NU_Group_6.raw vals$rawfile: /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_014_S823704_WT-3-C_Group_3.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_004_S823696_WT-1_Group_1.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_009_S823708_W-1-NU_Group_5.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_019_S823712_M-2-NU_Group_6.raw, 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/srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_020_S823706_M-2-C_Group_4.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_006_S823709_W-2-NU_Group_5.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_003_S823703_WT-2-C_Group_3.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_018_S823700_M-2_Group_2.raw, /srv/www/htdocs//p36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_013_S823711_M-1-NU_Group_6.raw reading index for 20241105_C36765_003_S823703_WT-2-C_Group_3.raw... reading index for 20241105_C36765_004_S823696_WT-1_Group_1.raw... reading index for 20241105_C36765_009_S823708_W-1-NU_Group_5.raw... reading index for 20241105_C36765_019_S823712_M-2-NU_Group_6.raw... reading index for 20241105_C36765_005_S823707_M-3-C_Group_4.raw... reading index for 20241105_C36765_021_S823701_M-3_Group_2.raw... reading index for 20241105_C36765_017_S823702_WT-1-C_Group_3.raw... reading index for 20241105_C36765_014_S823704_WT-3-C_Group_3.raw... reading index for 20241105_C36765_002_S823705_M-1-C_Group_4.raw... reading index for 20241105_C36765_011_S823697_WT-2_Group_1.raw... reading index for 20241105_C36765_007_S823710_W-3-NU_Group_5.raw... reading index for 20241105_C36765_020_S823706_M-2-C_Group_4.raw... reading index for 20241105_C36765_022_S823698_WT-3_Group_1.raw... reading index for 20241105_C36765_015_S823699_M-1_Group_2.raw... reading index for 20241105_C36765_018_S823700_M-2_Group_2.raw... reading index for 20241105_C36765_010_S823713_M-3-NU_Group_6.raw... reading index for 20241105_C36765_006_S823709_W-2-NU_Group_5.raw... reading index for 20241105_C36765_013_S823711_M-1-NU_Group_6.raw... saving 'login and webservicepassword' ... list(list(`_classname` = "workunit", `_id` = 316996, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36765), 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(2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2720114), list(`_classname` = "resource", `_id` = 2720113), list(`_classname` = "resource", `_id` = 2720112), list(`_classname` = "resource", `_id` = 2720111), list(`_classname` = "resource", `_id` = 2720110), list(`_classname` = "resource", `_id` = 2720109), list(`_classname` = "resource", `_id` = 2720108), list(`_classname` = "resource", `_id` = 2720107), list(`_classname` = "resource", `_id` = 2720106), list( `_classname` = "resource", `_id` = 2720105), list(`_classname` = "resource", `_id` = 2720104), list(`_classname` = "resource", `_id` = 2720103), list(`_classname` = "resource", `_id` = 2720102), list(`_classname` = "resource", `_id` = 2720101), list(`_classname` = "resource", `_id` = 2720100), list(`_classname` = 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"scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36765/workunit_316996/WU316996-20241107-0952-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 316996))) The current plot is available as workunit 316996. Rendering actionButton to link workunit 316996 in B-Fabric. saving 'login and webservicepassword' ... plotLockMassCorrection Rendering actionButton to link workunit 316996 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 316997, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36765), created = "2024-11-07 09:53:00", createdby = "tobiasko", description = "input files:\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_014_S823704_WT-3-C_Group_3.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_004_S823696_WT-1_Group_1.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_009_S823708_W-1-NU_Group_5.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_019_S823712_M-2-NU_Group_6.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_017_S823702_WT-1-C_Group_3.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_007_S823710_W-3-NU_Group_5.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_005_S823707_M-3-C_Group_4.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_022_S823698_WT-3_Group_1.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_021_S823701_M-3_Group_2.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_010_S823713_M-3-NU_Group_6.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_002_S823705_M-1-C_Group_4.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_011_S823697_WT-2_Group_1.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_015_S823699_M-1_Group_2.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_020_S823706_M-2-C_Group_4.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_006_S823709_W-2-NU_Group_5.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_003_S823703_WT-2-C_Group_3.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_018_S823700_M-2_Group_2.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_013_S823711_M-1-NU_Group_6.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2720114), list(`_classname` = "resource", `_id` = 2720113), list(`_classname` = "resource", `_id` = 2720112), list(`_classname` = "resource", `_id` = 2720111), list(`_classname` = "resource", `_id` = 2720110), list(`_classname` = "resource", `_id` = 2720109), list(`_classname` = "resource", `_id` = 2720108), list(`_classname` = "resource", `_id` = 2720107), list(`_classname` = "resource", `_id` = 2720106), list( `_classname` = "resource", `_id` = 2720105), list(`_classname` = "resource", `_id` = 2720104), list(`_classname` = "resource", `_id` = 2720103), list(`_classname` = "resource", `_id` = 2720102), list(`_classname` = "resource", `_id` = 2720101), list(`_classname` = "resource", `_id` = 2720100), list(`_classname` = "resource", `_id` = 2720099), list(`_classname` = "resource", `_id` = 2720098), list(`_classname` = "resource", `_id` = 2720097)), modified = "2024-11-07 09:53:00", modifiedby = "tobiasko", name = "plotLockMassCorrection", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2720119, container = list(`_classname` = "order", `_id` = 36765), created = "2024-11-07 09:53:00", createdby = "tobiasko", filechecksum = "71c764953d04438c4e01c9e7964e8061", junk = "false", modified = "2024-11-07 09:53:00", modifiedby = "tobiasko", name = "WU316997-20241107-0953-rawDiag.pdf", relativepath = "container_36765/workunit_316997/WU316997-20241107-0953-rawDiag.pdf", size = "128103", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36765/workunit_316997/WU316997-20241107-0953-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36765/workunit_316997/WU316997-20241107-0953-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 316997))) The current plot is available as workunit 316997. Rendering actionButton to link workunit 316997 in B-Fabric. plotInjectionTime Rendering actionButton to link workunit 316997 in B-Fabric. list(list(`_classname` = "workunit", `_id` = 316999, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36765), created = "2024-11-07 09:54:51", createdby = "tobiasko", description = "input files:\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_014_S823704_WT-3-C_Group_3.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_004_S823696_WT-1_Group_1.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_009_S823708_W-1-NU_Group_5.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_019_S823712_M-2-NU_Group_6.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_017_S823702_WT-1-C_Group_3.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_007_S823710_W-3-NU_Group_5.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_005_S823707_M-3-C_Group_4.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_022_S823698_WT-3_Group_1.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_021_S823701_M-3_Group_2.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_010_S823713_M-3-NU_Group_6.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_002_S823705_M-1-C_Group_4.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_011_S823697_WT-2_Group_1.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_015_S823699_M-1_Group_2.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_020_S823706_M-2-C_Group_4.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_006_S823709_W-2-NU_Group_5.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_003_S823703_WT-2-C_Group_3.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_018_S823700_M-2_Group_2.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_013_S823711_M-1-NU_Group_6.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2720114), list(`_classname` = "resource", `_id` = 2720113), list(`_classname` = "resource", `_id` = 2720112), list(`_classname` = "resource", `_id` = 2720111), list(`_classname` = "resource", `_id` = 2720110), list(`_classname` = "resource", `_id` = 2720109), list(`_classname` = "resource", `_id` = 2720108), list(`_classname` = "resource", `_id` = 2720107), list(`_classname` = "resource", `_id` = 2720106), list( `_classname` = "resource", `_id` = 2720105), list(`_classname` = "resource", `_id` = 2720104), list(`_classname` = "resource", `_id` = 2720103), list(`_classname` = "resource", `_id` = 2720102), list(`_classname` = "resource", `_id` = 2720101), list(`_classname` = "resource", `_id` = 2720100), list(`_classname` = "resource", `_id` = 2720099), list(`_classname` = "resource", `_id` = 2720098), list(`_classname` = "resource", `_id` = 2720097)), modified = "2024-11-07 09:54:51", modifiedby = "tobiasko", name = "plotInjectionTime", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2720121, container = list(`_classname` = "order", `_id` = 36765), created = "2024-11-07 09:54:52", createdby = "tobiasko", filechecksum = "54ebdb56610b73512b13f55456044001", junk = "false", modified = "2024-11-07 09:54:52", modifiedby = "tobiasko", name = "WU316999-20241107-0954-rawDiag.pdf", relativepath = "container_36765/workunit_316999/WU316999-20241107-0954-rawDiag.pdf", size = "1912010", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36765/workunit_316999/WU316999-20241107-0954-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36765/workunit_316999/WU316999-20241107-0954-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 316999))) The current plot is available as workunit 316999. Rendering actionButton to link workunit 316999 in B-Fabric. plotTicBasepeak Rendering actionButton to link workunit 316999 in B-Fabric. Warning in ggplot2::geom_violin() : All aesthetics have length 1, but the data has 45946 rows. ℹ Please consider using `annotate()` or provide this layer with data containing a single row. list(list(`_classname` = "workunit", `_id` = 317000, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "order", `_id` = 36765), created = "2024-11-07 09:56:07", createdby = "tobiasko", description = "input files:\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_014_S823704_WT-3-C_Group_3.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_004_S823696_WT-1_Group_1.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_009_S823708_W-1-NU_Group_5.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_019_S823712_M-2-NU_Group_6.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_017_S823702_WT-1-C_Group_3.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_007_S823710_W-3-NU_Group_5.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_005_S823707_M-3-C_Group_4.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_022_S823698_WT-3_Group_1.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_021_S823701_M-3_Group_2.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_010_S823713_M-3-NU_Group_6.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_002_S823705_M-1-C_Group_4.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_011_S823697_WT-2_Group_1.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_015_S823699_M-1_Group_2.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_020_S823706_M-2-C_Group_4.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_006_S823709_W-2-NU_Group_5.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_003_S823703_WT-2-C_Group_3.raw\np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_018_S823700_M-2_Group_2.raw \np36765/Proteomics/EXPLORIS_2/analytic_20241105/20241105_C36765_013_S823711_M-1-NU_Group_6.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2720114), list(`_classname` = "resource", `_id` = 2720113), list(`_classname` = "resource", `_id` = 2720112), list(`_classname` = "resource", `_id` = 2720111), list(`_classname` = "resource", `_id` = 2720110), list(`_classname` = "resource", `_id` = 2720109), list(`_classname` = "resource", `_id` = 2720108), list(`_classname` = "resource", `_id` = 2720107), list(`_classname` = "resource", `_id` = 2720106), list( `_classname` = "resource", `_id` = 2720105), list(`_classname` = "resource", `_id` = 2720104), list(`_classname` = "resource", `_id` = 2720103), list(`_classname` = "resource", `_id` = 2720102), list(`_classname` = "resource", `_id` = 2720101), list(`_classname` = "resource", `_id` = 2720100), list(`_classname` = "resource", `_id` = 2720099), list(`_classname` = "resource", `_id` = 2720098), list(`_classname` = "resource", `_id` = 2720097)), modified = "2024-11-07 09:56:07", modifiedby = "tobiasko", name = "plotTicBasepeak", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2720122, container = list(`_classname` = "order", `_id` = 36765), created = "2024-11-07 09:56:08", createdby = "tobiasko", filechecksum = "de00f576285f80831f29fdf0c659e9c0", junk = "false", modified = "2024-11-07 09:56:08", modifiedby = "tobiasko", name = "WU317000-20241107-0956-rawDiag.pdf", relativepath = "container_36765/workunit_317000/WU317000-20241107-0956-rawDiag.pdf", size = "259953", status = "available", storage = list(`_classname` = "storage", `_id` = 10), uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_36765/workunit_317000/WU317000-20241107-0956-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_36765/workunit_317000/WU317000-20241107-0956-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 317000))) The current plot is available as workunit 317000. Rendering actionButton to link workunit 317000 in B-Fabric. plotMzDistribution plotTicBasepeak Execution halted