Listening on http://127.0.0.1:46107
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241203_20241203cleavage/20241203_017_S852304_D7UT_1MUreaTryp_DDA.raw
vals$rawfile: /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241203_20241203cleavage/20241203_017_S852304_D7UT_1MUreaTryp_DDA.raw
reading index for 20241203_017_S852304_D7UT_1MUreaTryp_DDA.raw...

Warning: Error in : BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  199: <Anonymous>
  198: stop
  197: .bpinit
  196: bplapply
  194: BiocParallel::bplapply
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
Warning: Error in : BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  177: <Anonymous>
  176: stop
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241203_20241203cleavage/20241203_018_S852308_D7AT_2MUreaTryp_DDA.raw
vals$rawfile: /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241203_20241203cleavage/20241203_018_S852308_D7AT_2MUreaTryp_DDA.raw
reading index for 20241203_018_S852308_D7AT_2MUreaTryp_DDA.raw...

Warning: Error in : BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  199: <Anonymous>
  198: stop
  197: .bpinit
  196: bplapply
  194: BiocParallel::bplapply
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
output$employee <- renderUI({
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
output$employee <- renderUI({
bfabricConnectionWorking TRUE
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "project", isolate(input$project),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
resourcesSelected: /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241203_20241203cleavage/20241203_017_S852304_D7UT_1MUreaTryp_DDA.raw
vals$rawfile: /srv/www/htdocs//p28115/Proteomics/EXPLORIS_1/wzhong_20241203_20241203cleavage/20241203_017_S852304_D7UT_1MUreaTryp_DDA.raw
reading index for 20241203_017_S852304_D7UT_1MUreaTryp_DDA.raw...

Warning: Error in : BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  199: <Anonymous>
  198: stop
  197: .bpinit
  196: bplapply
  194: BiocParallel::bplapply
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
Warning: Error in : BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  177: <Anonymous>
  176: stop
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
Warning: Error in : BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  177: <Anonymous>
  176: stop
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20240524/20240524_004_autoQC03dda.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_1/antdit_20240524/20240524_004_autoQC03dda.raw
reading index for 20240524_004_autoQC03dda.raw...

Warning: Error in : BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  199: <Anonymous>
  198: stop
  197: .bpinit
  196: bplapply
  194: BiocParallel::bplapply
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_003_S848507_D_TEAB_Digestion_BasicDepletion_TODIGEST.raw, /srv/www/htdocs//p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_002_S848505_B_NaCl_Digestion_AcidicDepletion_TODIGEST.raw, /srv/www/htdocs//p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_004_S848508_E_Control_Digestion_NoDepletion.raw
vals$rawfile: /srv/www/htdocs//p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_003_S848507_D_TEAB_Digestion_BasicDepletion_TODIGEST.raw,
	/srv/www/htdocs//p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_002_S848505_B_NaCl_Digestion_AcidicDepletion_TODIGEST.raw,
	/srv/www/htdocs//p37105/Proteomics/EXPLORIS_2/analytic_20241205/20241205_C37105_004_S848508_E_Control_Digestion_NoDepletion.raw
reading index for 20241205_C37105_003_S848507_D_TEAB_Digestion_BasicDepletion_TODIGEST.raw...

reading index for 20241205_C37105_002_S848505_B_NaCl_Digestion_AcidicDepletion_TODIGEST.raw...

reading index for 20241205_C37105_004_S848508_E_Control_Digestion_NoDepletion.raw...

Warning: Error in : BiocParallel errors
  3 remote errors, element index: 1, 2, 3
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  199: <Anonymous>
  198: stop
  197: .bpinit
  196: bplapply
  194: BiocParallel::bplapply
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
Warning: Error in : BiocParallel errors
  3 remote errors, element index: 1, 2, 3
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  177: <Anonymous>
  176: stop
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_006_autoQC03dda.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_006_autoQC03dda.raw
reading index for 20240507_006_autoQC03dda.raw...

Warning: Error in : BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  199: <Anonymous>
  198: stop
  197: .bpinit
  196: bplapply
  194: BiocParallel::bplapply
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_006_autoQC03dda.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/analytic_20240507/20240507_006_autoQC03dda.raw
reading index for 20240507_006_autoQC03dda.raw...

Warning: Error in : BiocParallel errors
  1 remote errors, element index: 1
  0 unevaluated and other errors
  first remote error:
Error in .isAssemblyWorking(): 'rawrr.exe' not found.
Run 'rawrr::installRawrrExe()'. For more information, type '?rawrr.exe'.

  199: <Anonymous>
  198: stop
  197: .bpinit
  196: bplapply
  194: BiocParallel::bplapply
  191: <reactive>
  189: .func
  186: contextFunc
  185: env$runWith
  178: ctx$run
  177: self$.updateValue
  175: data
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plot
    1: runApp