Listening on http://127.0.0.1:45911
Loading required package: rawDiag
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240325_250pgHeLaFAIMS/JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_02.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240325_250pgHeLaFAIMS/JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_04.raw, /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240325_250pgHeLaFAIMS/JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_03.raw
vals$rawfile: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240325_250pgHeLaFAIMS/JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_02.raw,
	/srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240325_250pgHeLaFAIMS/JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_04.raw,
	/srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240325_250pgHeLaFAIMS/JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_03.raw
reading index for JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_03.raw...

reading index for JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_04.raw...

reading index for JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_02.raw...

plotTicBasepeak
saving 'login and webservicepassword' ...
list(list(errorreport = "Container 34645 is not extensible!"))list(list(errorreport = "No value specified for workunitid!"))
The current plot is available as workunit .
resourcesSelected: /srv/www/htdocs//p35134/Proteomics/ASTRAL_1/tobiasko_20241011_VanquishNeoTrapElute/20241011_002_autoQC03dia.raw
vals$rawfile: /srv/www/htdocs//p35134/Proteomics/ASTRAL_1/tobiasko_20241011_VanquishNeoTrapElute/20241011_002_autoQC03dia.raw
reading index for 20241011_002_autoQC03dia.raw...

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p35134/Proteomics/ASTRAL_1/tobiasko_20241011_VanquishNeoTrapElute/20241011_002_autoQC03dia.raw
vals$rawfile: /srv/www/htdocs//p35134/Proteomics/ASTRAL_1/tobiasko_20241011_VanquishNeoTrapElute/20241011_002_autoQC03dia.raw
reading index for 20241011_002_autoQC03dia.raw...

plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p35134/Proteomics/ASTRAL_1/tobiasko_20241011_VanquishNeoTrapElute/20241011_002_autoQC03dia.raw
vals$rawfile: /srv/www/htdocs//p35134/Proteomics/ASTRAL_1/tobiasko_20241011_VanquishNeoTrapElute/20241011_002_autoQC03dia.raw
reading index for 20241011_002_autoQC03dia.raw...

saving 'login and webservicepassword' ...
list(list(`_classname` = "workunit", `_id` = 318877, application = list(`_classname` = "application", `_id` = 225), container = list(`_classname` = "project", `_id` = 35134), created = "2024-12-13 16:45:59", createdby = "paolo", description = "input files:\np35134/Proteomics/ASTRAL_1/tobiasko_20241011_VanquishNeoTrapElute/20241011_002_autoQC03dia.raw\n\nGenerated by Rpkg https://github.com/fgcz/bfabricShiny/ version 0.13.0.\nSystem information: Linux, 5.10.0-28-amd64, #1 SMP Debian 5.10.209-2 (2024-01-31), fgcz-c-072, x86_64, unknown, www-data, www-data\n\nTo help us funding further development, please cite:\n(bfabricSiny) PMID: 36073980 DOI: 10.1515/jib-2022-0031", 
    exportable = "false", inputresource = list(list(`_classname` = "resource", `_id` = 2704022)), modified = "2024-12-13 16:45:59", modifiedby = "paolo", name = "plotChargeState", status = "AVAILABLE"))list(list(`_classname` = "resource", `_id` = 2759066, container = list(`_classname` = "project", `_id` = 35134), created = "2024-12-13 16:45:59", createdby = "paolo", filechecksum = "d496f087c7ace12e0db3968e606c4aa7", junk = "false", modified = "2024-12-13 16:45:59", modifiedby = "paolo", name = "WU318877-20241213-1645-rawDiag.pdf", relativepath = "container_35134/workunit_318877/WU318877-20241213-1645-rawDiag.pdf", size = "5472", status = "available", storage = list(`_classname` = "storage", `_id` = 10), 
    uri = list("https://fgcz-bfabric.uzh.ch/dmexternal/container_35134/workunit_318877/WU318877-20241213-1645-rawDiag.pdf", "scp://localhost/export/bfabric/data/b-fabric-external-repo/container_35134/workunit_318877/WU318877-20241213-1645-rawDiag.pdf"), workunit = list(`_classname` = "workunit", `_id` = 318877)))
The current plot is available as workunit 318877.
Rendering actionButton to link workunit 318877 in B-Fabric.
saving 'login and webservicepassword' ...
plotChargeState
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240325_250pgHeLaFAIMS/JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_04.raw
vals$rawfile: /srv/www/htdocs//p34645/Proteomics/ASTRAL_1/cpanse_20240325_250pgHeLaFAIMS/JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_04.raw
reading index for JH_250pgHeLa_CV50_20mz_39ms_50SPD_25cmIO_04.raw...

plotTicBasepeak
saving 'login and webservicepassword' ...
list(list(errorreport = "Container 34645 is not extensible!"))list(list(errorreport = "No value specified for workunitid!"))
The current plot is available as workunit .


Execution halted