Listening on http://127.0.0.1:45729
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Loading required package: rawrr
Warning: Error in path.expand: invalid 'path' argument
  101: path.expand
  100: normalizePath
   99: .checkRawFile
   98: readFileHeader
   97: renderTable
   96: func
   83: renderFunc
   82: output$OrbitrapFun02-fileHeader
    1: runApp
Warning in file(file, "rt") :
  cannot open file 'graphics/rawrr_logo-colormap.rgb': No such file or directory
Warning: Error in file: cannot open the connection
  172: file
  171: read.table
  170: read.csv
  169: .rawrr_logo
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plotTools
    1: runApp
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw
resourcesSelected: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw
resourcesSelected: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw
resourcesSelected: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/EXPLORIS_2/lkunz_20220819/20220819_004_S408771_Kuppfer_KF_200_enriched_DDA.raw
Warning: Error in path.expand: invalid 'path' argument
  101: path.expand
  100: normalizePath
   99: .checkRawFile
   98: readFileHeader
   97: renderTable
   96: func
   83: renderFunc
   82: output$OrbitrapFun02-fileHeader
    1: runApp
Warning in file(file, "rt") :
  cannot open file 'graphics/rawrr_logo-colormap.rgb': No such file or directory
Warning: Error in file: cannot open the connection
  172: file
  171: read.table
  170: read.csv
  169: .rawrr_logo
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plotTools
    1: runApp
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw

resourcesSelected: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw

resourcesSelected: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw

resourcesSelected: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw

resourcesSelected: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw

Warning: Error in path.expand: invalid 'path' argument
  101: path.expand
  100: normalizePath
   99: .checkRawFile
   98: readFileHeader
   97: renderTable
   96: func
   83: renderFunc
   82: output$OrbitrapFun02-fileHeader
    1: runApp
Warning in file(file, "rt") :
  cannot open file 'graphics/rawrr_logo-colormap.rgb': No such file or directory
Warning: Error in file: cannot open the connection
  172: file
  171: read.table
  170: read.csv
  169: .rawrr_logo
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plotTools
    1: runApp
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
resourcesSelected: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw
vals$rawfile: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw

fn has changed to /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw
Reading raw file: /srv/www/htdocs//p3000/Proteomics/LUMOS_2/roschi_20231113_DIA_K562/20231113_002_S193756_K-562_N_A_tMS2org.raw
Plotting chromatograms ...
Warning: Error in path.expand: invalid 'path' argument
  101: path.expand
  100: normalizePath
   99: .checkRawFile
   98: readFileHeader
   97: renderTable
   96: func
   83: renderFunc
   82: output$OrbitrapFun02-fileHeader
    1: runApp
Warning in file(file, "rt") :
  cannot open file 'graphics/rawrr_logo-colormap.rgb': No such file or directory
Warning: Error in file: cannot open the connection
  172: file
  171: read.table
  170: read.csv
  169: .rawrr_logo
  168: renderPlot
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$OrbitrapFun02-plotTools
    1: runApp
output$employee <- renderUI({
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Warning in .read(login = login, webservicepassword = webservicepassword,  :
  query failed.
bfabricConnectionWorking FALSE
saving 'login and webservicepassword' ...
output$employee <- renderUI({
bfabricConnectionWorking TRUE
'empdegree' found.
saving 'login and webservicepassword' ...


Execution halted