Listening on http://127.0.0.1:42625
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Error in parse(file, keep.source = FALSE, srcfile = src, encoding = enc) : 
  /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R:195:28: unexpected ')'
194: #               file = csvFilename(),
195:                 row.names=F)
                                ^
Possible missing comma at:
110:    samplelist <- samplelist[order(sapply(samplelist, function(x) as.numeric(x$`_position`)))]
                                                                      ^
Possible missing comma at:
121:    for (r in 1:length(samplelist)){
               ^
Possible missing comma at:
121:    for (r in 1:length(samplelist)){
                  ^
Possible unmatched ')' at:
195:	        row.names=F)
    	                   ^
Possible unmatched '}' at:
197:  })
      ^
Possible unmatched ')' at:
197:  })
       ^
Possible unmatched '}' at:
199:})
    ^
Possible unmatched ')' at:
199:})
     ^
Warning: Error in sourceUTF8: Error sourcing /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R
  1: runApp
Error in sourceUTF8(serverR, envir = new.env(parent = sharedEnv)) : 
  Error sourcing /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R
Error in parse(file, keep.source = FALSE, srcfile = src, encoding = enc) : 
  /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R:195:28: unexpected ')'
194: #               file = csvFilename(),
195:                 row.names=F)
                                ^
Possible missing comma at:
110:    samplelist <- samplelist[order(sapply(samplelist, function(x) as.numeric(x$`_position`)))]
                                                                      ^
Possible missing comma at:
121:    for (r in 1:length(samplelist)){
               ^
Possible missing comma at:
121:    for (r in 1:length(samplelist)){
                  ^
Possible unmatched ')' at:
195:	        row.names=F)
    	                   ^
Possible unmatched '}' at:
197:  })
      ^
Possible unmatched ')' at:
197:  })
       ^
Possible unmatched '}' at:
199:})
    ^
Possible unmatched ')' at:
199:})
     ^
Warning: Error in sourceUTF8: Error sourcing /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R
  1: runApp
Error in sourceUTF8(serverR, envir = new.env(parent = sharedEnv)) : 
  Error sourcing /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R
saving 'login and webservicepassword' ...

read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user mderrico
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saving 'login and webservicepassword' ...
Error in parse(file, keep.source = FALSE, srcfile = src, encoding = enc) : 
  /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/ui.R:36:2: unexpected ')'
35:   )
36: ))
     ^
Possible unmatched ')' at:
36:))
    ^
Warning: Error in sourceUTF8: Error sourcing /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/ui.R
  1: runApp
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user mderrico
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name = "QC_307882_2", name = "QC_307821_2", name = "QC_307830_2", name = "QC_307839_2", name = "QC_307848_2", name = "QC_307857_2", name = "QC_307866_2")NULL
Warning: Error in <Anonymous>: arguments imply differing number of rows: 30, 0
  87: stop
  86: <Anonymous>
  84: as.data.frame.list
  82: data.frame
  81: output$outputKable [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#166]
   1: runApp
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"20230616_C25922_056_S318195_check_sample_type", "20230616_C25800_057_S318196_check_sample_type", "20230616_C25800_058_S318197_check_sample_type", "20230616_C25916_059_S318198_check_sample_type", "20230616_C25916_060_S318199_check_sample_type", "20230616_C25922_061_S318200_check_sample_type", "20230616_C25922_062_S318201_check_sample_type", "20230616_C25922_063_S318202_check_sample_type", "20230616_C25922_064_S318203_check_sample_type", "20230616_C25922_065_S318204_check_sample_type", "20230616_C25922_066_S318205_check_sample_type", 
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saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user mderrico
c("20230616_C31230_001_S488884_QGenTest1", "20230616_C31230_002_S488885_QGenTest2", "20230616_C31230_003_S488886_QGenTest3", "20230616_C31230_004_S488887_QGenTest4", "20230616_C31230_005_S488888_QGenTest5", "20230616_C31230_006_S488889_QGenTest6", "20230616_C31230_007_S488890_QGenTest7", "20230616_C31230_008_S488891_QGenTest8", "20230616_C31230_009_S488892_QGenTest9", "20230616_C31230_010_S488893_QGenTest10", "20230616_C31230_011_S488894_QGenTest11", "20230616_C31230_012_S488895_QGenTest12", "20230616_C31230_013_S509312_control", 
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Warning: Error in reportFilename: could not find function "reportFilename"
  1: runApp
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user mderrico
c("20230616_C25230_001_S306760_check_sample_type", "20230616_C25230_002_S306761_check_sample_type", "20230616_C25287_003_S306762_check_sample_type", "20230616_C25230_004_S306763_check_sample_type", "20230616_C25230_005_S306764_check_sample_type", "20230616_C25287_006_S306765_check_sample_type", "20230616_C25230_007_S306766_check_sample_type", "20230616_C25230_008_S306767_check_sample_type", "20230616_C25287_009_S306768_check_sample_type", "20230616_C25230_010_S306769_check_sample_type", "20230616_C25230_011_S306770_check_sample_type", 
"20230616_C25230_012_S306771_check_sample_type", "20230616_C25230_013_S306772_check_sample_type", "20230616_C25230_014_S306773_check_sample_type", "20230616_C25230_015_S306774_check_sample_type", "20230616_C25230_016_S306775_check_sample_type", "20230616_C25230_017_S306776_check_sample_type", "20230616_C25230_018_S306777_check_sample_type", "20230616_C25287_019_S306778_check_sample_type")c("D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25287\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25287\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", 
"D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25287\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", 
"D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p25287\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616")c("A1", "A2", "A3", "B1", "B2", "B3", "C1", "C2", "C3", "D1", "D2", "E1", "E2", "F1", "F2", "G1", "G2", "H1", "H2")c(2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2)c("FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ")306760:306778c(name = "QC_301930", name = "QC_301938", name = "QC_302597", name = "QC_301931", name = "QC_301939", name = "QC_302598", name = "QC_301932", name = "QC_301940", name = "QC_302599", name = "QC_301933", name = "QC_301941", name = "QC_301934", name = "QC_301942", name = "QC_301935", name = "QC_301943", name = "QC_301936", name = "QC_301944", name = "QC_301937", name = "QC_302596")NULL
Warning: Error in <Anonymous>: arguments imply differing number of rows: 19, 0
  87: stop
  86: <Anonymous>
  84: as.data.frame.list
  82: data.frame
  81: output$outputKable [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#166]
   1: runApp
c("20230616_C31230_001_S488884_QGenTest1", "20230616_C31230_002_S488885_QGenTest2", "20230616_C31230_003_S488886_QGenTest3", "20230616_C31230_004_S488887_QGenTest4", "20230616_C31230_005_S488888_QGenTest5", "20230616_C31230_006_S488889_QGenTest6", "20230616_C31230_007_S488890_QGenTest7", "20230616_C31230_008_S488891_QGenTest8", "20230616_C31230_009_S488892_QGenTest9", "20230616_C31230_010_S488893_QGenTest10", "20230616_C31230_011_S488894_QGenTest11", "20230616_C31230_012_S488895_QGenTest12", "20230616_C31230_013_S509312_control", 
"20230616_C31230_014_S509303_control", "20230616_C31230_015_S509304_control", "20230616_C31230_016_S509305_control", "20230616_C31230_017_S509306_control", "20230616_C31230_018_S509307_control", "20230616_C31230_019_S509302_control", "20230616_C31230_020_S509313_control", "20230616_C31230_021_S509294_control", "20230616_C31230_022_S509295_control")c("D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", 
"D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", 
"D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616", 
"D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230616")c("A1", "A2", "A3", "A4", "A5", "A6", "A7", "A8", "A9", "A10", "A11", "A12", "H3", "H4", "H5", "H6", "H7", "H8", "H9", "H10", "H11", "H12")c(2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2)c("FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ")c(488884, 488885, 488886, 488887, 488888, 488889, 488890, 488891, 488892, 488893, 488894, 488895, 509312, 509303, 509304, 509305, 509306, 509307, 509302, 509313, 509294, 509295)c(name = "QGenTest1", name = "QGenTest2", name = "QGenTest3", name = "QGenTest4", name = "QGenTest5", name = "QGenTest6", name = "QGenTest7", name = "QGenTest8", name = "QGenTest9", name = "QGenTest10", name = "QGenTest11", name = "QGenTest12", name = "Plate_2200_13", name = "Plate_2200_8", name = "Plate_2200_9", name = "Plate_2200_10", name = "Plate_2200_11", name = "Plate_2200_12", name = "Plate_2200_7", name = "Plate_2200_14", name = "Plate_2200_5", name = "Plate_2200_6")c("", "", "", "", "", "", "", "", "", "", "", "", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods")
writing csv file
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user mderrico
c("20230616_C31230_001_S488884_QGenTest1", "20230616_C31230_002_S488885_QGenTest2", "20230616_C31230_003_S488886_QGenTest3", "20230616_C31230_004_S488887_QGenTest4", "20230616_C31230_005_S488888_QGenTest5", "20230616_C31230_006_S488889_QGenTest6", "20230616_C31230_007_S488890_QGenTest7", "20230616_C31230_008_S488891_QGenTest8", "20230616_C31230_009_S488892_QGenTest9", "20230616_C31230_010_S488893_QGenTest10", "20230616_C31230_011_S488894_QGenTest11", "20230616_C31230_012_S488895_QGenTest12", "20230616_C31230_013_S509312_control", 
"20230616_C31230_014_S509303_control", "20230616_C31230_015_S509304_control", "20230616_C31230_016_S509305_control", "20230616_C31230_017_S509306_control", "20230616_C31230_018_S509307_control", "20230616_C31230_019_S509302_control", "20230616_C31230_020_S509313_control", "20230616_C31230_021_S509294_control", "20230616_C31230_022_S509295_control")c("D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", 
"D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", 
"D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616")c("A1", "A2", "A3", "A4", "A5", "A6", "A7", "A8", "A9", "A10", "A11", "A12", "H3", "H4", "H5", "H6", "H7", "H8", "H9", "H10", "H11", "H12")c(2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2)c("FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ")c(488884, 488885, 488886, 488887, 488888, 488889, 488890, 488891, 488892, 488893, 488894, 488895, 509312, 509303, 509304, 509305, 509306, 509307, 509302, 509313, 509294, 509295)c(name = "QGenTest1", name = "QGenTest2", name = "QGenTest3", name = "QGenTest4", name = "QGenTest5", name = "QGenTest6", name = "QGenTest7", name = "QGenTest8", name = "QGenTest9", name = "QGenTest10", name = "QGenTest11", name = "QGenTest12", name = "Plate_2200_13", name = "Plate_2200_8", name = "Plate_2200_9", name = "Plate_2200_10", name = "Plate_2200_11", name = "Plate_2200_12", name = "Plate_2200_7", name = "Plate_2200_14", name = "Plate_2200_5", name = "Plate_2200_6")c("", "", "", "", "", "", "", "", "", "", "", "", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods")
writing csv file

Error in parse(file, keep.source = FALSE, srcfile = src, encoding = enc) : 
  /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R:180:4: unexpected ')'
179:       kableExtra::kable_styling("striped", full_width = FALSE)
180:   })
        ^
Possible missing comma at:
110:    samplelist <- samplelist[order(sapply(samplelist, function(x) as.numeric(x$`_position`)))]
                                                                      ^
Possible missing comma at:
121:    for (r in 1:length(samplelist)){
               ^
Possible missing comma at:
121:    for (r in 1:length(samplelist)){
                  ^
Possible unmatched ')' at:
180:  })
       ^
Possible missing comma at:
182:   csvFilename <- reactive({
       ^
Possible missing comma at:
187:  output$downloadReportButton <- renderUI({
      ^
Possible missing comma at:
194: output$downloadCSV <- downloadHandler( 
     ^
Possible unmatched '}' at:
228:})
    ^
Possible unmatched ')' at:
228:})
     ^
Warning: Error in sourceUTF8: Error sourcing /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R
  1: runApp
Error in sourceUTF8(serverR, envir = new.env(parent = sharedEnv)) : 
  Error sourcing /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R
Error in parse(file, keep.source = FALSE, srcfile = src, encoding = enc) : 
  /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R:180:4: unexpected ')'
179:       kableExtra::kable_styling("striped", full_width = FALSE)
180:   })
        ^
Possible missing comma at:
110:    samplelist <- samplelist[order(sapply(samplelist, function(x) as.numeric(x$`_position`)))]
                                                                      ^
Possible missing comma at:
121:    for (r in 1:length(samplelist)){
               ^
Possible missing comma at:
121:    for (r in 1:length(samplelist)){
                  ^
Possible unmatched ')' at:
180:  })
       ^
Possible missing comma at:
182:   csvFilename <- reactive({
       ^
Possible missing comma at:
187:  output$downloadReportButton <- renderUI({
      ^
Possible missing comma at:
194: output$downloadCSV <- downloadHandler( 
     ^
Possible unmatched '}' at:
228:})
    ^
Possible unmatched ')' at:
228:})
     ^
Warning: Error in sourceUTF8: Error sourcing /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R
  1: runApp
Error in sourceUTF8(serverR, envir = new.env(parent = sharedEnv)) : 
  Error sourcing /home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R
saving 'login and webservicepassword' ...
Creating table for plate ID = 2200
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user mderrico
c("20230616_C31230_001_S488884_QGenTest1", "20230616_C31230_002_S488885_QGenTest2", "20230616_C31230_003_S488886_QGenTest3", "20230616_C31230_004_S488887_QGenTest4", "20230616_C31230_005_S488888_QGenTest5", "20230616_C31230_006_S488889_QGenTest6", "20230616_C31230_007_S488890_QGenTest7", "20230616_C31230_008_S488891_QGenTest8", "20230616_C31230_009_S488892_QGenTest9", "20230616_C31230_010_S488893_QGenTest10", "20230616_C31230_011_S488894_QGenTest11", "20230616_C31230_012_S488895_QGenTest12", "20230616_C31230_013_S509312_control", 
"20230616_C31230_014_S509303_control", "20230616_C31230_015_S509304_control", "20230616_C31230_016_S509305_control", "20230616_C31230_017_S509306_control", "20230616_C31230_018_S509307_control", "20230616_C31230_019_S509302_control", "20230616_C31230_020_S509313_control", "20230616_C31230_021_S509294_control", "20230616_C31230_022_S509295_control")c("D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", 
"D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", 
"D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616")c("A1", "A2", "A3", "A4", "A5", "A6", "A7", "A8", "A9", "A10", "A11", "A12", "H3", "H4", "H5", "H6", "H7", "H8", "H9", "H10", "H11", "H12")c(2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2)c("FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ")c(488884, 488885, 488886, 488887, 488888, 488889, 488890, 488891, 488892, 488893, 488894, 488895, 509312, 509303, 509304, 509305, 509306, 509307, 509302, 509313, 509294, 509295)c(name = "QGenTest1", name = "QGenTest2", name = "QGenTest3", name = "QGenTest4", name = "QGenTest5", name = "QGenTest6", name = "QGenTest7", name = "QGenTest8", name = "QGenTest9", name = "QGenTest10", name = "QGenTest11", name = "QGenTest12", name = "Plate_2200_13", name = "Plate_2200_8", name = "Plate_2200_9", name = "Plate_2200_10", name = "Plate_2200_11", name = "Plate_2200_12", name = "Plate_2200_7", name = "Plate_2200_14", name = "Plate_2200_5", name = "Plate_2200_6")c("", "", "", "", "", "", "", "", "", "", "", "", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods")
Warning: Error in <reactive:getTable>: object 'false' not found
  99: data.frame [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#168]
  98: <reactive:getTable> [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#168]
  82: getTable
  81: output$outputKable [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#176]
   1: runApp
saving 'login and webservicepassword' ...
Creating table for plate ID = 2
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user mderrico
Warning: Error in <Anonymous>: arguments imply differing number of rows: 19, 0
  104: stop
  103: <Anonymous>
  101: as.data.frame.list
   99: data.frame
   98: <reactive:getTable> [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#168]
   82: getTable
   81: output$outputKable [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#176]
    1: runApp
Creating table for plate ID = 2200
Warning: Error in <reactive:getTable>: object 'false' not found
  99: data.frame
  98: <reactive:getTable> [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#168]
  82: getTable
  81: output$outputKable [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#176]
   1: runApp
saving 'login and webservicepassword' ...
Creating table for plate ID = 2200
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user mderrico
c("20230616_C31230_001_S488884_QGenTest1", "20230616_C31230_002_S488885_QGenTest2", "20230616_C31230_003_S488886_QGenTest3", "20230616_C31230_004_S488887_QGenTest4", "20230616_C31230_005_S488888_QGenTest5", "20230616_C31230_006_S488889_QGenTest6", "20230616_C31230_007_S488890_QGenTest7", "20230616_C31230_008_S488891_QGenTest8", "20230616_C31230_009_S488892_QGenTest9", "20230616_C31230_010_S488893_QGenTest10", "20230616_C31230_011_S488894_QGenTest11", "20230616_C31230_012_S488895_QGenTest12", "20230616_C31230_013_S509312_control", 
"20230616_C31230_014_S509303_control", "20230616_C31230_015_S509304_control", "20230616_C31230_016_S509305_control", "20230616_C31230_017_S509306_control", "20230616_C31230_018_S509307_control", "20230616_C31230_019_S509302_control", "20230616_C31230_020_S509313_control", "20230616_C31230_021_S509294_control", "20230616_C31230_022_S509295_control")c("D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", 
"D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", 
"D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616")c("A1", "A2", "A3", "A4", "A5", "A6", "A7", "A8", "A9", "A10", "A11", "A12", "H3", "H4", "H5", "H6", "H7", "H8", "H9", "H10", "H11", "H12")c(2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2)c("FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ")c(488884, 488885, 488886, 488887, 488888, 488889, 488890, 488891, 488892, 488893, 488894, 488895, 509312, 509303, 509304, 509305, 509306, 509307, 509302, 509313, 509294, 509295)c("QGenTest1", "QGenTest2", "QGenTest3", "QGenTest4", "QGenTest5", "QGenTest6", "QGenTest7", "QGenTest8", "QGenTest9", "QGenTest10", "QGenTest11", "QGenTest12", "Plate_2200_13", "Plate_2200_8", "Plate_2200_9", "Plate_2200_10", "Plate_2200_11", "Plate_2200_12", "Plate_2200_7", "Plate_2200_14", "Plate_2200_5", "Plate_2200_6")c("", "", "", "", "", "", "", "", "", "", "", "", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods")
writing csv file
c("20230616_C31230_001_S488884_QGenTest1", "20230616_C31230_002_S488885_QGenTest2", "20230616_C31230_003_S488886_QGenTest3", "20230616_C31230_004_S488887_QGenTest4", "20230616_C31230_005_S488888_QGenTest5", "20230616_C31230_006_S488889_QGenTest6", "20230616_C31230_007_S488890_QGenTest7", "20230616_C31230_008_S488891_QGenTest8", "20230616_C31230_009_S488892_QGenTest9", "20230616_C31230_010_S488893_QGenTest10", "20230616_C31230_011_S488894_QGenTest11", "20230616_C31230_012_S488895_QGenTest12", "20230616_C31230_013_S509312_control", 
"20230616_C31230_014_S509303_control", "20230616_C31230_015_S509304_control", "20230616_C31230_016_S509305_control", "20230616_C31230_017_S509306_control", "20230616_C31230_018_S509307_control", "20230616_C31230_019_S509302_control", "20230616_C31230_020_S509313_control", "20230616_C31230_021_S509294_control", "20230616_C31230_022_S509295_control")c("D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", 
"D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", 
"D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616", "D:\\Data2San\\p31230\\Metabolomics\\QUANTIVA_1\\analytic_20230616")c("A1", "A2", "A3", "A4", "A5", "A6", "A7", "A8", "A9", "A10", "A11", "A12", "H3", "H4", "H5", "H6", "H7", "H8", "H9", "H10", "H11", "H12")c(2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2)c("FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ")c(488884, 488885, 488886, 488887, 488888, 488889, 488890, 488891, 488892, 488893, 488894, 488895, 509312, 509303, 509304, 509305, 509306, 509307, 509302, 509313, 509294, 509295)c("QGenTest1", "QGenTest2", "QGenTest3", "QGenTest4", "QGenTest5", "QGenTest6", "QGenTest7", "QGenTest8", "QGenTest9", "QGenTest10", "QGenTest11", "QGenTest12", "Plate_2200_13", "Plate_2200_8", "Plate_2200_9", "Plate_2200_10", "Plate_2200_11", "Plate_2200_12", "Plate_2200_7", "Plate_2200_14", "Plate_2200_5", "Plate_2200_6")c("", "", "", "", "", "", "", "", "", "", "", "", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods")


Execution halted