Listening on http://127.0.0.1:43561 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... Creating table for plate ID = 2200 read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user mderrico c("20230623_C31230_001_S488884_QGenTest1", "20230623_C31230_002_S488885_QGenTest2", "20230623_C31230_003_S488886_QGenTest3", "20230623_C31230_004_S488887_QGenTest4", "20230623_C31230_005_S488888_QGenTest5", "20230623_C31230_006_S488889_QGenTest6", "20230623_C31230_007_S488890_QGenTest7", "20230623_C31230_008_S488891_QGenTest8", "20230623_C31230_009_S488892_QGenTest9", "20230623_C31230_010_S488893_QGenTest10", "20230623_C31230_011_S488894_QGenTest11", "20230623_C31230_012_S488895_QGenTest12", "20230623_C31230_013_S509312_control", "20230623_C31230_014_S509303_control", "20230623_C31230_015_S509304_control", "20230623_C31230_016_S509305_control", "20230623_C31230_017_S509306_control", "20230623_C31230_018_S509307_control", "20230623_C31230_019_S509302_control", "20230623_C31230_020_S509313_control", "20230623_C31230_021_S509294_control", "20230623_C31230_022_S509295_control")c("D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623", "D:\\Data2San\\p31230\\Metabolomics\\QEXACTIVEHF_3\\analytic_20230623")c("A1", "A2", "A3", "A4", "A5", "A6", "A7", "A8", "A9", "A10", "A11", "A12", "H3", "H4", "H5", "H6", "H7", "H8", "H9", "H10", "H11", "H12")c(2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2, 2)c("FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ", "FGCZ")c(488884, 488885, 488886, 488887, 488888, 488889, 488890, 488891, 488892, 488893, 488894, 488895, 509312, 509303, 509304, 509305, 509306, 509307, 509302, 509313, 509294, 509295)c("QGenTest1", "QGenTest2", "QGenTest3", "QGenTest4", "QGenTest5", "QGenTest6", "QGenTest7", "QGenTest8", "QGenTest9", "QGenTest10", "QGenTest11", "QGenTest12", "Plate_2200_13", "Plate_2200_8", "Plate_2200_9", "Plate_2200_10", "Plate_2200_11", "Plate_2200_12", "Plate_2200_7", "Plate_2200_14", "Plate_2200_5", "Plate_2200_6")c("", "", "", "", "", "", "", "", "", "", "", "", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods", "C:\\Xcalibur\\methods") saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user mderrico Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#86] 104: read_plateid 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#61] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in selectInput: unused argument (selectized = TRUE) 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#62] 96: func 83: renderFunc 82: output$plateID 1: runApp saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user mderrico Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#86] 104: read_plateid 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#61] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#86] 104: read_plateid 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#61] 96: func 83: renderFunc 82: output$plateID 1: runApp saving 'login and webservicepassword' ... Request started from user mderrico Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#86] 104: read_plateid 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#61] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#86] 104: read_plateid 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#61] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#86] 104: read_plateid 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#61] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#86] 104: read_plateid 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#61] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#86] 104: read_plateid 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#61] 96: func 83: renderFunc 82: output$plateID 1: runApp Creating table for plate ID = 348 Warning: Error in : arguments imply differing number of rows: 96, 0 104: stop 103: 101: as.data.frame.list 99: data.frame 98: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#199] 82: getTable 81: output$outputKable [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#205] 1: runApp Creating table for plate ID = 348 Warning: Error in : arguments imply differing number of rows: 96, 0 104: stop 103: 101: as.data.frame.list 99: data.frame 98: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#199] 82: getTable 81: output$outputKable [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#205] 1: runApp Creating table for plate ID = 348 Warning: Error in : arguments imply differing number of rows: 96, 0 104: stop 103: 101: as.data.frame.list 99: data.frame 98: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#199] 82: getTable 81: output$outputKable [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#205] 1: runApp Creating table for plate ID = 348 Warning: Error in : arguments imply differing number of rows: 96, 0 104: stop 103: 101: as.data.frame.list 99: data.frame 98: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#199] 82: getTable 81: output$outputKable [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#205] 1: runApp Creating table for plate ID = 348 Warning: Error in : arguments imply differing number of rows: 96, 0 104: stop 103: 101: as.data.frame.list 99: data.frame 98: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#199] 82: getTable 81: output$outputKable [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#205] 1: runApp Creating table for plate ID = 348 Warning: Error in : arguments imply differing number of rows: 96, 0 104: stop 103: 101: as.data.frame.list 99: data.frame 98: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#199] 82: getTable 81: output$outputKable [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#205] 1: runApp saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user mderrico saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user mderrico Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. jsonify failed: bfabric python module. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#87] 104: read_plateid 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#61] 96: func 83: renderFunc 82: output$plateID 1: runApp list(list(`_classname` = "plate", `_id` = 2200, created = "2023-03-27 14:57:35", createdby = "othman", deletable = "false", layout = "96-well", modified = "2023-05-15 12:55:54", modifiedby = "othman", name = "QGen_Metabolomics_Test", sample = list(list(`_classname` = "sample", `_gridposition` = "A1", `_id` = 488884, `_position` = "1"), list(`_classname` = "sample", `_gridposition` = "A2", `_id` = 488885, `_position` = "2"), list(`_classname` = "sample", `_gridposition` = "A3", `_id` = 488886, `_position` = "3"), list(`_classname` = "sample", `_gridposition` = "A4", `_id` = 488887, `_position` = "4"), list(`_classname` = "sample", `_gridposition` = "A5", `_id` = 488888, `_position` = "5"), list(`_classname` = "sample", `_gridposition` = "A6", `_id` = 488889, `_position` = "6"), list(`_classname` = "sample", `_gridposition` = "A7", `_id` = 488890, `_position` = "7"), list(`_classname` = "sample", `_gridposition` = "A8", `_id` = 488891, `_position` = "8"), list(`_classname` = "sample", `_gridposition` = "A9", `_id` = 488892, `_position` = "9"), list(`_classname` = "sample", `_gridposition` = "A10", `_id` = 488893, `_position` = "10"), list(`_classname` = "sample", `_gridposition` = "A11", `_id` = 488894, `_position` = "11"), list(`_classname` = "sample", `_gridposition` = "A12", `_id` = 488895, `_position` = "12"), list(`_classname` = "sample", `_gridposition` = "H3", `_id` = 509312, `_position` = "87"), list(`_classname` = "sample", `_gridposition` = "H4", `_id` = 509303, `_position` = "88"), list(`_classname` = "sample", `_gridposition` = "H5", `_id` = 509304, `_position` = "89"), list(`_classname` = "sample", `_gridposition` = "H6", `_id` = 509305, `_position` = "90"), list(`_classname` = "sample", `_gridposition` = "H7", `_id` = 509306, `_position` = "91"), list(`_classname` = "sample", `_gridposition` = "H8", `_id` = 509307, `_position` = "92"), list(`_classname` = "sample", `_gridposition` = "H9", `_id` = 509302, `_position` = "93"), list(`_classname` = "sample", `_gridposition` = "H10", `_id` = 509313, `_position` = "94"), list(`_classname` = "sample", `_gridposition` = "H11", `_id` = 509294, `_position` = "95"), list(`_classname` = "sample", `_gridposition` = "H12", `_id` = 509295, `_position` = "96")), status = "ready", statusmodified = "2023-05-15T12:55:54.871", statusmodifiedby = list(`_classname` = "user", `_id` = 8761), supervisor = list(`_classname` = "user", `_id` = 8761), type = "Metabolomomics", updatable = "true")) saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user mderrico list(list(`_classname` = "plate", `_id` = 2200, created = "2023-03-27 14:57:35", createdby = "othman", deletable = "false", layout = "96-well", modified = "2023-05-15 12:55:54", modifiedby = "othman", name = "QGen_Metabolomics_Test", sample = list(list(`_classname` = "sample", `_gridposition` = "A1", `_id` = 488884, `_position` = "1"), list(`_classname` = "sample", `_gridposition` = "A2", `_id` = 488885, `_position` = "2"), list(`_classname` = "sample", `_gridposition` = "A3", `_id` = 488886, `_position` = "3"), list(`_classname` = "sample", `_gridposition` = "A4", `_id` = 488887, `_position` = "4"), list(`_classname` = "sample", `_gridposition` = "A5", `_id` = 488888, `_position` = "5"), list(`_classname` = "sample", `_gridposition` = "A6", `_id` = 488889, `_position` = "6"), list(`_classname` = "sample", `_gridposition` = "A7", `_id` = 488890, `_position` = "7"), list(`_classname` = "sample", `_gridposition` = "A8", `_id` = 488891, `_position` = "8"), list(`_classname` = "sample", `_gridposition` = "A9", `_id` = 488892, `_position` = "9"), list(`_classname` = "sample", `_gridposition` = "A10", `_id` = 488893, `_position` = "10"), list(`_classname` = "sample", `_gridposition` = "A11", `_id` = 488894, `_position` = "11"), list(`_classname` = "sample", `_gridposition` = "A12", `_id` = 488895, `_position` = "12"), list(`_classname` = "sample", `_gridposition` = "H3", `_id` = 509312, `_position` = "87"), list(`_classname` = "sample", `_gridposition` = "H4", `_id` = 509303, `_position` = "88"), list(`_classname` = "sample", `_gridposition` = "H5", `_id` = 509304, `_position` = "89"), list(`_classname` = "sample", `_gridposition` = "H6", `_id` = 509305, `_position` = "90"), list(`_classname` = "sample", `_gridposition` = "H7", `_id` = 509306, `_position` = "91"), list(`_classname` = "sample", `_gridposition` = "H8", `_id` = 509307, `_position` = "92"), list(`_classname` = "sample", `_gridposition` = "H9", `_id` = 509302, `_position` = "93"), list(`_classname` = "sample", `_gridposition` = "H10", `_id` = 509313, `_position` = "94"), list(`_classname` = "sample", `_gridposition` = "H11", `_id` = 509294, `_position` = "95"), list(`_classname` = "sample", `_gridposition` = "H12", `_id` = 509295, `_position` = "96")), status = "ready", statusmodified = "2023-05-15T12:55:54.871", statusmodifiedby = list(`_classname` = "user", `_id` = 8761), supervisor = list(`_classname` = "user", `_id` = 8761), type = "Metabolomomics", updatable = "true")) saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user mderrico Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: message 120: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#85] 104: read_plateid 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#61] 96: func 83: renderFunc 82: output$plateID 1: runApp saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user mderrico 2200 saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user mderrico Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: message 120: [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#85] 104: read_plateid 97: renderUI [/home/mderrico/_checkouts/bfabricShiny/inst/shiny/extractPlateId/server.R#61] 96: func 83: renderFunc 82: output$plateID 1: runApp 350 350 saving 'login and webservicepassword' ... Execution halted