Listening on http://127.0.0.1:45565 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cpanse saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2023-10-19 15:34:36.089374 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2023-10-19 15:34:37.703007 TIME info for plate ID 2725 0.00024104118347168TIME info for plate ID 2723 0.00024104118347168TIME info for plate ID 2707 0.00024104118347168TIME info for plate ID 2703 0.00024104118347168TIME info for plate ID 2694 0.00024104118347168TIME info for plate ID 2693 0.00024104118347168TIME info for plate ID 2688 0.00024104118347168TIME info for plate ID 2618 0.00024104118347168TIME info for plate ID 2617 0.00024104118347168TIME info for plate ID 2616 0.00024104118347168TIME info for plate ID 2598 0.00024104118347168TIME info for plate ID 2597 0.00024104118347168TIME info for plate ID 2596 0.00024104118347168 saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Creating table for plate ID = 2693 Reading plate 2693 Reading 96 samples Reading sample ID 511676 Reading sample ID 511709 Reading sample ID 511687 Reading sample ID 511713 Reading sample ID 511667 Reading sample ID 511731 Reading sample ID 511678 Reading sample ID 511680 Reading sample ID 511669 Reading sample ID 511690 Reading sample ID 511691 Reading sample ID 511674 Reading sample ID 511677 Reading sample ID 511739 Reading sample ID 511684 Reading sample ID 511685 Reading sample ID 511688 Reading sample ID 511720 Reading sample ID 511682 Reading sample ID 511658 Reading sample ID 511730 Reading sample ID 511736 Reading sample ID 511704 Reading sample ID 511711 Reading sample ID 511705 Reading sample ID 511698 Reading sample ID 511679 Reading sample ID 511697 Reading sample ID 511662 Reading sample ID 511689 Reading sample ID 511735 Reading sample ID 511665 Reading sample ID 511696 Reading sample ID 511717 Reading sample ID 511663 Reading sample ID 511703 Reading sample ID 511694 Reading sample ID 511672 Reading sample ID 511693 Reading sample ID 511725 Reading sample ID 511700 Reading sample ID 511728 Reading sample ID 511727 Reading sample ID 511706 Reading sample ID 511708 Reading sample ID 511710 Reading sample ID 511740 Reading sample ID 511657 Reading sample ID 511699 Reading sample ID 511712 Reading sample ID 511732 Reading sample ID 511666 Reading sample ID 511719 Reading sample ID 511721 Reading sample ID 511738 Reading sample ID 511695 Reading sample ID 511660 Reading sample ID 511716 Reading sample ID 511668 Reading sample ID 511675 Reading sample ID 511722 Reading sample ID 511724 Reading sample ID 511729 Reading sample ID 511681 Reading sample ID 511733 Reading sample ID 511737 Reading sample ID 511683 Reading sample ID 511673 Reading sample ID 511686 Reading sample ID 511726 Reading sample ID 511702 Reading sample ID 511671 Reading sample ID 511723 Reading sample ID 511714 Reading sample ID 511715 Reading sample ID 511664 Reading sample ID 511707 Reading sample ID 511734 Reading sample ID 511661 Reading sample ID 511692 Reading sample ID 511701 Reading sample ID 511659 Reading sample ID 511718 Reading sample ID 511670 Reading sample ID 498219 Reading sample ID 547001 Reading sample ID 509312 Reading sample ID 509303 Reading sample ID 509304 Reading sample ID 509305 Reading sample ID 509306 Reading sample ID 509307 Reading sample ID 509302 Reading sample ID 509313 Reading sample ID 509294 Reading sample ID 509295 TIME info loop processing full loop: 5.3278374671936 TIME info about loop processing: 5.44990205764771 VS read_sample function: 5.43387222290039 Plate 2693 added TIME info current after plate ID 2693 is processed: 2023-10-19 15:35:12.584705 TIME info current after table creation: 2023-10-19 15:35:12.58994 Warning: Error in utils::write.table: unimplemented type 'list' in 'EncodeElement' 1: runApp writing csv file /tmp/RtmpEZQCOz/fgcz-queue-generator_QEXACTIVEHF_2_plate2693.csv ... Warning: Error in utils::write.table: unimplemented type 'list' in 'EncodeElement' 1: runApp Execution halted