Listening on http://127.0.0.1:37945 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cpanse saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2023-10-19 16:28:19.934868 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2023-10-19 16:28:21.134976 TIME info for plate ID 2725 0.000432729721069336TIME info for plate ID 2723 0.000432729721069336TIME info for plate ID 2707 0.000432729721069336TIME info for plate ID 2703 0.000432729721069336TIME info for plate ID 2694 0.000432729721069336TIME info for plate ID 2693 0.000432729721069336TIME info for plate ID 2688 0.000432729721069336TIME info for plate ID 2618 0.000432729721069336TIME info for plate ID 2617 0.000432729721069336TIME info for plate ID 2616 0.000432729721069336TIME info for plate ID 2598 0.000432729721069336TIME info for plate ID 2597 0.000432729721069336TIME info for plate ID 2596 0.000432729721069336 saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Creating table for plate ID = 2693 Reading plate 2693 Reading 96 samples Reading sample ID 511676 Reading sample ID 511709 Reading sample ID 511687 Reading sample ID 511713 Reading sample ID 511667 Reading sample ID 511731 Reading sample ID 511678 Reading sample ID 511680 Reading sample ID 511669 Reading sample ID 511690 Reading sample ID 511691 Reading sample ID 511674 Reading sample ID 511677 Reading sample ID 511739 Reading sample ID 511684 Reading sample ID 511685 Reading sample ID 511688 Reading sample ID 511720 Reading sample ID 511682 Reading sample ID 511658 Reading sample ID 511730 Reading sample ID 511736 Reading sample ID 511704 Reading sample ID 511711 Reading sample ID 511705 Reading sample ID 511698 Reading sample ID 511679 Reading sample ID 511697 Reading sample ID 511662 Reading sample ID 511689 Reading sample ID 511735 Reading sample ID 511665 Reading sample ID 511696 Reading sample ID 511717 Reading sample ID 511663 Reading sample ID 511703 Reading sample ID 511694 Reading sample ID 511672 Reading sample ID 511693 Reading sample ID 511725 Reading sample ID 511700 Reading sample ID 511728 Reading sample ID 511727 Reading sample ID 511706 Reading sample ID 511708 Reading sample ID 511710 Reading sample ID 511740 Reading sample ID 511657 Reading sample ID 511699 Reading sample ID 511712 Reading sample ID 511732 Reading sample ID 511666 Reading sample ID 511719 Reading sample ID 511721 Reading sample ID 511738 Reading sample ID 511695 Reading sample ID 511660 Reading sample ID 511716 Reading sample ID 511668 Reading sample ID 511675 Reading sample ID 511722 Reading sample ID 511724 Reading sample ID 511729 Reading sample ID 511681 Reading sample ID 511733 Reading sample ID 511737 Reading sample ID 511683 Reading sample ID 511673 Reading sample ID 511686 Reading sample ID 511726 Reading sample ID 511702 Reading sample ID 511671 Reading sample ID 511723 Reading sample ID 511714 Reading sample ID 511715 Reading sample ID 511664 Reading sample ID 511707 Reading sample ID 511734 Reading sample ID 511661 Reading sample ID 511692 Reading sample ID 511701 Reading sample ID 511659 Reading sample ID 511718 Reading sample ID 511670 Reading sample ID 498219 Reading sample ID 547001 Reading sample ID 509312 Reading sample ID 509303 Reading sample ID 509304 Reading sample ID 509305 Reading sample ID 509306 Reading sample ID 509307 Reading sample ID 509302 Reading sample ID 509313 Reading sample ID 509294 Reading sample ID 509295 TIME info loop processing full loop: 4.91853547096252 TIME info about loop processing: 4.94807744026184 VS read_sample function: 4.93132138252258 Plate 2693 added TIME info current after plate ID 2693 is processed: 2023-10-19 16:28:39.431695 TIME info current after table creation: 2023-10-19 16:28:39.445505 writing csv file /tmp/RtmpblO1nx/fgcz-queue-generator_QEXACTIVEHF_3_plate2693.csv ... uploading to bfabric ... saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cpanse saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user martinaza saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2023-10-19 23:30:06.715237 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2023-10-19 23:30:07.926672 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2023-10-19 23:30:09.098161 TIME info for plate ID 2725 0.000281333923339844TIME info for plate ID 2723 0.000281333923339844TIME info for plate ID 2707 0.000281333923339844TIME info for plate ID 2703 0.000281333923339844TIME info for plate ID 2694 0.000281333923339844TIME info for plate ID 2693 0.000281333923339844TIME info for plate ID 2688 0.000281333923339844TIME info for plate ID 2618 0.000281333923339844TIME info for plate ID 2617 0.000281333923339844TIME info for plate ID 2616 0.000281333923339844TIME info for plate ID 2598 0.000281333923339844TIME info for plate ID 2597 0.000281333923339844TIME info for plate ID 2596 0.000281333923339844 saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Creating table for plate ID = 2703 Reading plate 2703 Reading 96 samples Reading sample ID 511844 Reading sample ID 511877 Reading sample ID 511855 Reading sample ID 511881 Reading sample ID 511835 Reading sample ID 511899 Reading sample ID 511846 Reading sample ID 511848 Reading sample ID 511837 Reading sample ID 511858 Reading sample ID 511859 Reading sample ID 511842 Reading sample ID 511845 Reading sample ID 511907 Reading sample ID 511852 Reading sample ID 511853 Reading sample ID 511856 Reading sample ID 511888 Reading sample ID 511850 Reading sample ID 511826 Reading sample ID 511898 Reading sample ID 511904 Reading sample ID 511872 Reading sample ID 511879 Reading sample ID 511873 Reading sample ID 511866 Reading sample ID 511847 Reading sample ID 511865 Reading sample ID 511830 Reading sample ID 511857 Reading sample ID 511903 Reading sample ID 511833 Reading sample ID 511864 Reading sample ID 511885 Reading sample ID 511831 Reading sample ID 511871 Reading sample ID 511862 Reading sample ID 511840 Reading sample ID 511861 Reading sample ID 511893 Reading sample ID 511868 Reading sample ID 511896 Reading sample ID 511895 Reading sample ID 511874 Reading sample ID 511876 Reading sample ID 511878 Reading sample ID 511908 Reading sample ID 511825 Reading sample ID 511867 Reading sample ID 511880 Reading sample ID 511900 Reading sample ID 511834 Reading sample ID 511887 Reading sample ID 511889 Reading sample ID 511906 Reading sample ID 511863 Reading sample ID 511828 Reading sample ID 511884 Reading sample ID 511836 Reading sample ID 511843 Reading sample ID 511890 Reading sample ID 511892 Reading sample ID 511897 Reading sample ID 511849 Reading sample ID 511901 Reading sample ID 511905 Reading sample ID 511851 Reading sample ID 511841 Reading sample ID 511854 Reading sample ID 511894 Reading sample ID 511870 Reading sample ID 511839 Reading sample ID 511891 Reading sample ID 511882 Reading sample ID 511883 Reading sample ID 511832 Reading sample ID 511875 Reading sample ID 511902 Reading sample ID 511829 Reading sample ID 511860 Reading sample ID 511869 Reading sample ID 511827 Reading sample ID 511886 Reading sample ID 511838 Reading sample ID 498219 Reading sample ID 547001 Reading sample ID 509312 Reading sample ID 509303 Reading sample ID 509304 Reading sample ID 509305 Reading sample ID 509306 Reading sample ID 509307 Reading sample ID 509302 Reading sample ID 509313 Reading sample ID 509294 Reading sample ID 509295 TIME info loop processing full loop: 4.98442912101746 TIME info about loop processing: 5.00834250450134 VS read_sample function: 4.99499607086182 Plate 2703 added TIME info current after plate ID 2703 is processed: 2023-10-19 23:30:40.463675 TIME info current after table creation: 2023-10-19 23:30:40.474368 writing csv file /tmp/RtmpblO1nx/fgcz-queue-generator_QEXACTIVE_3_plate2703.csv ... uploading to bfabric ... Execution halted