Listening on http://127.0.0.1:41603
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user tobiasko
saving 'login and webservicepassword' ...
TIME info current before reading plate ID from order ID: 2023-11-27 15:38:40.997465
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
TIME info current before reading plate ID from order ID: 2023-11-27 15:38:42.365031
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
saving 'login and webservicepassword' ...
TIME info current before reading plate ID from order ID: 2023-11-27 15:38:44.098398
TIME info for plate ID 3132 0.000111103057861328
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
Creating table for plate ID = 3132
Reading plate  3132
Reading 12 samples
Reading sample ID 601952
Reading sample ID 601945
Reading sample ID 601942
Reading sample ID 601949
Reading sample ID 601946
Reading sample ID 601943
Reading sample ID 601944
Reading sample ID 601948
Reading sample ID 601950
Reading sample ID 601941
Reading sample ID 601951
Reading sample ID 601947
TIME info loop processing full loop: 1.31424474716187
TIME info about loop processing: 1.31823468208313 VS read_sample function: 1.31657600402832
Plate 3132 added
TIME info current after plate ID  3132 is processed: 2023-11-27 15:39:33.875597
TIME info current after table creation: 2023-11-27 15:39:33.898988
writing csv file /tmp/Rtmphsu8R9/fgcz-queue-generator_EXPLORIS_1_plate3132.csv ...
uploading to bfabric ...


Execution halted