Listening on http://127.0.0.1:46435 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user martinaza saving 'login and webservicepassword' ... Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. TIME info current before reading plate ID from order ID: 2024-02-02 13:31:00.339116 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. TIME info current before reading plate ID from order ID: 2024-02-02 13:31:01.588543 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. TIME info current before reading plate ID from order ID: 2024-02-02 13:31:03.03962 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-02-02 13:31:04.225219 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-02-02 13:31:05.400596 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-02-02 13:31:06.564716 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp TIME info current before reading plate ID from order ID: 2024-02-02 13:31:07.82871 TIME info for plate ID 3324 0.000189304351806641TIME info for plate ID 3323 0.000189304351806641 Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "login", isolate(input$login), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword), : Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user. Creating table for plate ID = 3323 Reading plate 3323 Reading 96 samples Reading sample ID 633135 Reading sample ID 633116 Reading sample ID 633101 Reading sample ID 633081 Reading sample ID 633110 Reading sample ID 633131 Reading sample ID 633076 Reading sample ID 633100 Reading sample ID 633134 Reading sample ID 633137 Reading sample ID 633149 Reading sample ID 633111 Reading sample ID 633147 Reading sample ID 633144 Reading sample ID 633148 Reading sample ID 633077 Reading sample ID 633113 Reading sample ID 633082 Reading sample ID 633124 Reading sample ID 633085 Reading sample ID 633119 Reading sample ID 633108 Reading sample ID 633139 Reading sample ID 633140 Reading sample ID 633151 Reading sample ID 633150 Reading sample ID 633088 Reading sample ID 633138 Reading sample ID 633133 Reading sample ID 633125 Reading sample ID 633096 Reading sample ID 633086 Reading sample ID 633126 Reading sample ID 633129 Reading sample ID 633145 Reading sample ID 633127 Reading sample ID 633102 Reading sample ID 633087 Reading sample ID 633090 Reading sample ID 633142 Reading sample ID 633091 Reading sample ID 633095 Reading sample ID 633083 Reading sample ID 633080 Reading sample ID 633104 Reading sample ID 633128 Reading sample ID 633156 Reading sample ID 633073 Reading sample ID 633079 Reading sample ID 633152 Reading sample ID 633143 Reading sample ID 633098 Reading sample ID 633153 Reading sample ID 633094 Reading sample ID 633132 Reading sample ID 633114 Reading sample ID 633109 Reading sample ID 633117 Reading sample ID 633122 Reading sample ID 633123 Reading sample ID 633106 Reading sample ID 633130 Reading sample ID 633107 Reading sample ID 633112 Reading sample ID 633155 Reading sample ID 633120 Reading sample ID 633136 Reading sample ID 633099 Reading sample ID 633089 Reading sample ID 633154 Reading sample ID 633115 Reading sample ID 633075 Reading sample ID 633118 Reading sample ID 633093 Reading sample ID 633105 Reading sample ID 633074 Reading sample ID 633092 Reading sample ID 633084 Reading sample ID 633121 Reading sample ID 633078 Reading sample ID 633103 Reading sample ID 633097 Reading sample ID 633141 Reading sample ID 633146 Reading sample ID 498219 Reading sample ID 547001 Reading sample ID 509312 Reading sample ID 509303 Reading sample ID 509304 Reading sample ID 509305 Reading sample ID 509306 Reading sample ID 509307 Reading sample ID 509302 Reading sample ID 509313 Reading sample ID 509294 Reading sample ID 509295 TIME info loop processing full loop: 2.29414558410645 TIME info about loop processing: 2.32008719444275 VS read_sample function: 2.30375027656555 Plate 3323 added TIME info current after plate ID 3323 is processed: 2024-02-02 13:32:15.696548 TIME info current after table creation: 2024-02-02 13:32:15.735189 Creating table for plate ID = 3323 Reading plate 3323 Reading 96 samples Reading sample ID 633135 Reading sample ID 633116 Reading sample ID 633101 Reading sample ID 633081 Reading sample ID 633110 Reading sample ID 633131 Reading sample ID 633076 Reading sample ID 633100 Reading sample ID 633134 Reading sample ID 633137 Reading sample ID 633149 Reading sample ID 633111 Reading sample ID 633147 Reading sample ID 633144 Reading sample ID 633148 Reading sample ID 633077 Reading sample ID 633113 Reading sample ID 633082 Reading sample ID 633124 Reading sample ID 633085 Reading sample ID 633119 Reading sample ID 633108 Reading sample ID 633139 Reading sample ID 633140 Reading sample ID 633151 Reading sample ID 633150 Reading sample ID 633088 Reading sample ID 633138 Reading sample ID 633133 Reading sample ID 633125 Reading sample ID 633096 Reading sample ID 633086 Reading sample ID 633126 Reading sample ID 633129 Reading sample ID 633145 Reading sample ID 633127 Reading sample ID 633102 Reading sample ID 633087 Reading sample ID 633090 Reading sample ID 633142 Reading sample ID 633091 Reading sample ID 633095 Reading sample ID 633083 Reading sample ID 633080 Reading sample ID 633104 Reading sample ID 633128 Reading sample ID 633156 Reading sample ID 633073 Reading sample ID 633079 Reading sample ID 633152 Reading sample ID 633143 Reading sample ID 633098 Reading sample ID 633153 Reading sample ID 633094 Reading sample ID 633132 Reading sample ID 633114 Reading sample ID 633109 Reading sample ID 633117 Reading sample ID 633122 Reading sample ID 633123 Reading sample ID 633106 Reading sample ID 633130 Reading sample ID 633107 Reading sample ID 633112 Reading sample ID 633155 Reading sample ID 633120 Reading sample ID 633136 Reading sample ID 633099 Reading sample ID 633089 Reading sample ID 633154 Reading sample ID 633115 Reading sample ID 633075 Reading sample ID 633118 Reading sample ID 633093 Reading sample ID 633105 Reading sample ID 633074 Reading sample ID 633092 Reading sample ID 633084 Reading sample ID 633121 Reading sample ID 633078 Reading sample ID 633103 Reading sample ID 633097 Reading sample ID 633141 Reading sample ID 633146 Reading sample ID 498219 Reading sample ID 547001 Reading sample ID 509312 Reading sample ID 509303 Reading sample ID 509304 Reading sample ID 509305 Reading sample ID 509306 Reading sample ID 509307 Reading sample ID 509302 Reading sample ID 509313 Reading sample ID 509294 Reading sample ID 509295 TIME info loop processing full loop: 2.36266207695007 TIME info about loop processing: 2.41242957115173 VS read_sample function: 2.39849877357483 Plate 3323 added TIME info current after plate ID 3323 is processed: 2024-02-02 13:35:18.181149 TIME info current after table creation: 2024-02-02 13:35:18.205821 TIME info current after table creation: 2024-02-02 13:35:19.74064 Execution halted