Listening on http://127.0.0.1:39497
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user paolo
saving 'login and webservicepassword' ...
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
saving 'login and webservicepassword' ...
read bfabricposturl https://fgcz-c-072.uzh.ch:5000/.
Request started from user cpanse
saving 'login and webservicepassword' ...
TIME info current before reading plate ID from order ID: 2024-05-02 11:48:50.735208
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
TIME info current before reading plate ID from order ID: 2024-05-02 11:48:52.584395
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
TIME info current before reading plate ID from order ID: 2024-05-02 11:48:52.966559
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
TIME info current before reading plate ID from order ID: 2024-05-02 11:48:53.292034
TIME info for plate ID 3646 0.000250101089477539
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
TIME info current before reading plate ID from order ID: 2024-05-02 11:49:23.779436
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
saving 'login and webservicepassword' ...
saving 'login and webservicepassword' ...
TIME info current before reading plate ID from order ID: 2024-05-02 11:49:25.118897
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
TIME info current before reading plate ID from order ID: 2024-05-02 11:49:26.115523
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
TIME info current before reading plate ID from order ID: 2024-05-02 11:49:27.069127
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
TIME info current before reading plate ID from order ID: 2024-05-02 11:49:29.450839
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
TIME info current before reading plate ID from order ID: 2024-05-02 11:49:34.140436
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
TIME info current before reading plate ID from order ID: 2024-05-02 11:49:34.905948
Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(),  :
  query failed.
Warning: Error in $: $ operator is invalid for atomic vectors
  121: append
  120: <reactive:read_plateid> [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108]
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160]
   96: func
   83: renderFunc
   82: output$extrameasurement
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66]
   96: func
   83: renderFunc
   82: output$plateID
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81]
   96: func
   83: renderFunc
   82: output$injvol
    1: runApp
Warning: Error in $: $ operator is invalid for atomic vectors
  106: <Anonymous>
  105: stop
  104: read_plateid
   97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144]
   96: func
   83: renderFunc
   82: output$extratext
    1: runApp
TIME info current before reading plate ID from order ID: 2024-05-02 11:49:36.290495
TIME info for plate ID 3646 0.000283956527709961
saving 'login and webservicepassword' ...
Warning in shinyStore::updateStore(session, "login", isolate(input$login),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
Warning in shinyStore::updateStore(session, "webservicepassword", isolate(input$webservicepassword),  :
  Encryption requested, but the user is not authenticated. The encryption will be MUCH weaker without binding to a logged-in user.
saving 'login and webservicepassword' ...
Creating table for plate ID = 3646
Reading plate  3646
Reading 48 samples
Reading sample ID 679160
Reading sample ID 679177
Reading sample ID 679183
Reading sample ID 679158
Reading sample ID 679155
Reading sample ID 679165
Reading sample ID 679169
Reading sample ID 679141
Reading sample ID 679186
Reading sample ID 679178
Reading sample ID 679174
Reading sample ID 679150
Reading sample ID 679163
Reading sample ID 679182
Reading sample ID 679162
Reading sample ID 679173
Reading sample ID 679185
Reading sample ID 679166
Reading sample ID 679161
Reading sample ID 679153
Reading sample ID 679146
Reading sample ID 679152
Reading sample ID 679184
Reading sample ID 679143
Reading sample ID 679159
Reading sample ID 679147
Reading sample ID 679145
Reading sample ID 679176
Reading sample ID 679154
Reading sample ID 679175
Reading sample ID 679144
Reading sample ID 679171
Reading sample ID 679187
Reading sample ID 679168
Reading sample ID 679179
Reading sample ID 679181
Reading sample ID 679151
Reading sample ID 679149
Reading sample ID 679167
Reading sample ID 679157
Reading sample ID 679170
Reading sample ID 679142
Reading sample ID 679148
Reading sample ID 679156
Reading sample ID 679164
Reading sample ID 679172
Reading sample ID 679180
Reading sample ID 679188
TIME info loop processing full loop: 0.814843893051147
TIME info about loop processing: 0.828143358230591 VS read_sample function: 0.82064151763916
Plate 3646 added
TIME info current after plate ID  3646 is processed: 2024-05-02 11:49:51.449524
TIME info current after table creation: 2024-05-02 11:49:51.456615
Creating table for plate ID = 3646
Reading plate  3646
Reading 48 samples
Reading sample ID 679160
Reading sample ID 679177
Reading sample ID 679183
Reading sample ID 679158
Reading sample ID 679155
Reading sample ID 679165
Reading sample ID 679169
Reading sample ID 679141
Reading sample ID 679186
Reading sample ID 679178
Reading sample ID 679174
Reading sample ID 679150
Reading sample ID 679163
Reading sample ID 679182
Reading sample ID 679162
Reading sample ID 679173
Reading sample ID 679185
Reading sample ID 679166
Reading sample ID 679161
Reading sample ID 679153
Reading sample ID 679146
Reading sample ID 679152
Reading sample ID 679184
Reading sample ID 679143
Reading sample ID 679159
Reading sample ID 679147
Reading sample ID 679145
Reading sample ID 679176
Reading sample ID 679154
Reading sample ID 679175
Reading sample ID 679144
Reading sample ID 679171
Reading sample ID 679187
Reading sample ID 679168
Reading sample ID 679179
Reading sample ID 679181
Reading sample ID 679151
Reading sample ID 679149
Reading sample ID 679167
Reading sample ID 679157
Reading sample ID 679170
Reading sample ID 679142
Reading sample ID 679148
Reading sample ID 679156
Reading sample ID 679164
Reading sample ID 679172
Reading sample ID 679180
Reading sample ID 679188
TIME info loop processing full loop: 0.986981153488159
TIME info about loop processing: 0.995690107345581 VS read_sample function: 0.991896629333496
Plate 3646 added
TIME info current after plate ID  3646 is processed: 2024-05-02 11:49:52.804594
TIME info current after table creation: 2024-05-02 11:49:52.809627


Execution halted