Listening on http://127.0.0.1:43847 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cpanse saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cpanse saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-05-03 10:35:18.053355 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-05-03 10:35:18.860094 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-05-03 10:35:19.429116 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-05-03 10:35:20.160072 TIME info for plate ID 3646 0.000466346740722656 saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Creating table for plate ID = 3646 Reading plate 3646 Reading 48 samples Reading sample ID 679160 Reading sample ID 679177 Reading sample ID 679183 Reading sample ID 679158 Reading sample ID 679155 Reading sample ID 679165 Reading sample ID 679169 Reading sample ID 679141 Reading sample ID 679186 Reading sample ID 679178 Reading sample ID 679174 Reading sample ID 679150 Reading sample ID 679163 Reading sample ID 679182 Reading sample ID 679162 Reading sample ID 679173 Reading sample ID 679185 Reading sample ID 679166 Reading sample ID 679161 Reading sample ID 679153 Reading sample ID 679146 Reading sample ID 679152 Reading sample ID 679184 Reading sample ID 679143 Reading sample ID 679159 Reading sample ID 679147 Reading sample ID 679145 Reading sample ID 679176 Reading sample ID 679154 Reading sample ID 679175 Reading sample ID 679144 Reading sample ID 679171 Reading sample ID 679187 Reading sample ID 679168 Reading sample ID 679179 Reading sample ID 679181 Reading sample ID 679151 Reading sample ID 679149 Reading sample ID 679167 Reading sample ID 679157 Reading sample ID 679170 Reading sample ID 679142 Reading sample ID 679148 Reading sample ID 679156 Reading sample ID 679164 Reading sample ID 679172 Reading sample ID 679180 Reading sample ID 679188 TIME info loop processing full loop: 1.20998811721802 TIME info about loop processing: 1.22773003578186 VS read_sample function: 1.21961522102356 Plate 3646 added TIME info current after plate ID 3646 is processed: 2024-05-03 10:35:35.213788 TIME info current after table creation: 2024-05-03 10:35:35.224033 Execution halted