Listening on http://127.0.0.1:43029 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cpanse saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-07-02 14:24:44.166535 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-07-02 14:24:45.067089 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-07-02 14:24:53.314559 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-07-02 14:24:54.433441 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-07-02 14:24:55.167488 TIME info for plate ID 3948 0.000426292419433594TIME info for plate ID 3947 0.000426292419433594TIME info for plate ID 3946 0.000426292419433594TIME info for plate ID 3945 0.000426292419433594 saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... Creating table for plate ID = 3945Creating table for plate ID = 3948Creating table for plate ID = 3946 Reading plate 3945 Reading 96 samples Reading sample ID 721544 Reading sample ID 721582 Reading sample ID 721557 Reading sample ID 721587 Reading sample ID 721534 Reading sample ID 721607 Reading sample ID 721547 Reading sample ID 721549 Reading sample ID 721536 Reading sample ID 721560 Reading sample ID 721561 Reading sample ID 721542 Reading sample ID 721545 Reading sample ID 721616 Reading sample ID 721553 Reading sample ID 721555 Reading sample ID 721558 Reading sample ID 721595 Reading sample ID 721551 Reading sample ID 721524 Reading sample ID 721606 Reading sample ID 721613 Reading sample ID 721576 Reading sample ID 721584 Reading sample ID 721577 Reading sample ID 721569 Reading sample ID 721548 Reading sample ID 721568 Reading sample ID 721528 Reading sample ID 721559 Reading sample ID 721612 Reading sample ID 721532 Reading sample ID 721567 Reading sample ID 721591 Reading sample ID 721529 Reading sample ID 721575 Reading sample ID 721565 Reading sample ID 721540 Reading sample ID 721564 Reading sample ID 721600 Reading sample ID 721572 Reading sample ID 721604 Reading sample ID 721603 Reading sample ID 721579 Reading sample ID 721581 Reading sample ID 721583 Reading sample ID 721617 Reading sample ID 721523 Reading sample ID 721571 Reading sample ID 721585 Reading sample ID 721608 Reading sample ID 721533 Reading sample ID 721593 Reading sample ID 721596 Reading sample ID 721615 Reading sample ID 721566 Reading sample ID 721526 Reading sample ID 721590 Reading sample ID 721535 Reading sample ID 721543 Reading sample ID 721597 Reading sample ID 721599 Reading sample ID 721605 Reading sample ID 721550 Reading sample ID 721609 Reading sample ID 721614 Reading sample ID 721552 Reading sample ID 721541 Reading sample ID 721556 Reading sample ID 721601 Reading sample ID 721574 Reading sample ID 721539 Reading sample ID 721598 Reading sample ID 721588 Reading sample ID 721589 Reading sample ID 721531 Reading sample ID 721580 Reading sample ID 721611 Reading sample ID 721527 Reading sample ID 721563 Reading sample ID 721573 Reading sample ID 721525 Reading sample ID 721592 Reading sample ID 721537 Reading sample ID 721530 Reading sample ID 721538 Reading sample ID 721546 Reading sample ID 721554 Reading sample ID 721562 Reading sample ID 721570 Reading sample ID 721578 Reading sample ID 721586 Reading sample ID 721594 Reading sample ID 721602 Reading sample ID 721610 Reading sample ID 721618 TIME info loop processing full loop: 1.39718317985535 TIME info about loop processing: 1.42138147354126 VS read_sample function: 1.40793943405151 Plate 3945 added TIME info current after plate ID 3945 is processed: 2024-07-02 17:17:25.991537 Reading plate 3948 Reading 96 samples Reading sample ID 721832 Reading sample ID 721870 Reading sample ID 721845 Reading sample ID 721875 Reading sample ID 721822 Reading sample ID 721895 Reading sample ID 721835 Reading sample ID 721837 Reading sample ID 721824 Reading sample ID 721848 Reading sample ID 721849 Reading sample ID 721830 Reading sample ID 721833 Reading sample ID 721904 Reading sample ID 721841 Reading sample ID 721843 Reading sample ID 721846 Reading sample ID 721883 Reading sample ID 721839 Reading sample ID 721812 Reading sample ID 721894 Reading sample ID 721901 Reading sample ID 721864 Reading sample ID 721872 Reading sample ID 721865 Reading sample ID 721857 Reading sample ID 721836 Reading sample ID 721856 Reading sample ID 721816 Reading sample ID 721847 Reading sample ID 721900 Reading sample ID 721820 Reading sample ID 721855 Reading sample ID 721879 Reading sample ID 721817 Reading sample ID 721863 Reading sample ID 721853 Reading sample ID 721828 Reading sample ID 721852 Reading sample ID 721888 Reading sample ID 721860 Reading sample ID 721892 Reading sample ID 721891 Reading sample ID 721867 Reading sample ID 721869 Reading sample ID 721871 Reading sample ID 721905 Reading sample ID 721811 Reading sample ID 721859 Reading sample ID 721873 Reading sample ID 721896 Reading sample ID 721821 Reading sample ID 721881 Reading sample ID 721884 Reading sample ID 721903 Reading sample ID 721854 Reading sample ID 721814 Reading sample ID 721878 Reading sample ID 721823 Reading sample ID 721831 Reading sample ID 721885 Reading sample ID 721887 Reading sample ID 721893 Reading sample ID 721838 Reading sample ID 721897 Reading sample ID 721902 Reading sample ID 721840 Reading sample ID 721829 Reading sample ID 721844 Reading sample ID 721889 Reading sample ID 721862 Reading sample ID 721827 Reading sample ID 721886 Reading sample ID 721876 Reading sample ID 721877 Reading sample ID 721819 Reading sample ID 721868 Reading sample ID 721899 Reading sample ID 721815 Reading sample ID 721851 Reading sample ID 721861 Reading sample ID 721813 Reading sample ID 721880 Reading sample ID 721825 Reading sample ID 721818 Reading sample ID 721826 Reading sample ID 721834 Reading sample ID 721842 Reading sample ID 721850 Reading sample ID 721858 Reading sample ID 721866 Reading sample ID 721874 Reading sample ID 721882 Reading sample ID 721890 Reading sample ID 721898 Reading sample ID 721906 TIME info loop processing full loop: 1.35779428482056 TIME info about loop processing: 1.40598225593567 VS read_sample function: 1.39264059066772 Plate 3948 added TIME info current after plate ID 3948 is processed: 2024-07-02 17:17:27.768443 Reading plate 3946 Reading 96 samples Reading sample ID 721640 Reading sample ID 721678 Reading sample ID 721653 Reading sample ID 721683 Reading sample ID 721630 Reading sample ID 721703 Reading sample ID 721643 Reading sample ID 721645 Reading sample ID 721632 Reading sample ID 721656 Reading sample ID 721657 Reading sample ID 721638 Reading sample ID 721641 Reading sample ID 721712 Reading sample ID 721649 Reading sample ID 721651 Reading sample ID 721654 Reading sample ID 721691 Reading sample ID 721647 Reading sample ID 721620 Reading sample ID 721702 Reading sample ID 721709 Reading sample ID 721672 Reading sample ID 721680 Reading sample ID 721673 Reading sample ID 721665 Reading sample ID 721644 Reading sample ID 721664 Reading sample ID 721624 Reading sample ID 721655 Reading sample ID 721708 Reading sample ID 721628 Reading sample ID 721663 Reading sample ID 721687 Reading sample ID 721625 Reading sample ID 721671 Reading sample ID 721661 Reading sample ID 721636 Reading sample ID 721660 Reading sample ID 721696 Reading sample ID 721668 Reading sample ID 721700 Reading sample ID 721699 Reading sample ID 721675 Reading sample ID 721677 Reading sample ID 721679 Reading sample ID 721713 Reading sample ID 721619 Reading sample ID 721667 Reading sample ID 721681 Reading sample ID 721704 Reading sample ID 721629 Reading sample ID 721689 Reading sample ID 721692 Reading sample ID 721711 Reading sample ID 721662 Reading sample ID 721622 Reading sample ID 721686 Reading sample ID 721631 Reading sample ID 721639 Reading sample ID 721693 Reading sample ID 721695 Reading sample ID 721701 Reading sample ID 721646 Reading sample ID 721705 Reading sample ID 721710 Reading sample ID 721648 Reading sample ID 721637 Reading sample ID 721652 Reading sample ID 721697 Reading sample ID 721670 Reading sample ID 721635 Reading sample ID 721694 Reading sample ID 721684 Reading sample ID 721685 Reading sample ID 721627 Reading sample ID 721676 Reading sample ID 721707 Reading sample ID 721623 Reading sample ID 721659 Reading sample ID 721669 Reading sample ID 721621 Reading sample ID 721688 Reading sample ID 721633 Reading sample ID 721626 Reading sample ID 721634 Reading sample ID 721642 Reading sample ID 721650 Reading sample ID 721658 Reading sample ID 721666 Reading sample ID 721674 Reading sample ID 721682 Reading sample ID 721690 Reading sample ID 721698 Reading sample ID 721706 Reading sample ID 721714 TIME info loop processing full loop: 1.40841460227966 TIME info about loop processing: 1.43180561065674 VS read_sample function: 1.41862630844116 Plate 3946 added TIME info current after plate ID 3946 is processed: 2024-07-02 17:17:29.471284 TIME info current after table creation: 2024-07-02 17:17:29.501879 Execution halted