Listening on http://127.0.0.1:33711 Loading required package: bfabricShiny Attaching package: 'bfabricShiny' The following object is masked from 'package:base': save saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cpanse saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-07-09 17:14:03.127982 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp saving 'login and webservicepassword' ... saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-07-09 17:14:05.570485 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-07-09 17:14:10.749796 TIME info for plate ID 3971 0.000404119491577148TIME info for plate ID 3908 0.000404119491577148TIME info for plate ID 3893 0.000404119491577148TIME info for plate ID 3775 0.000404119491577148TIME info for plate ID 3739 0.000404119491577148TIME info for plate ID 3738 0.000404119491577148TIME info for plate ID 3736 0.000404119491577148TIME info for plate ID 3696 0.000404119491577148TIME info for plate ID 3695 0.000404119491577148 saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-07-09 17:14:12.312483 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-07-09 17:14:12.771909 TIME info for plate ID 3948 0.000422000885009766TIME info for plate ID 3947 0.000422000885009766TIME info for plate ID 3946 0.000422000885009766TIME info for plate ID 3945 0.000422000885009766 TIME info current before reading plate ID from order ID: 2024-07-09 17:14:14.606392 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-07-09 17:14:15.674982 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp saving 'login and webservicepassword' ... read bfabricposturl https://fgcz-c-072.uzh.ch:5000/. Request started from user cpanse saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-07-09 17:14:30.002619 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-07-09 17:14:30.396213 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-07-09 17:14:31.120403 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-07-09 17:14:33.253959 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-07-09 17:14:42.054769 Warning in bfabricShiny::read(bf$login(), bf$webservicepassword(), posturl = posturl(), : query failed. Warning: Error in $: $ operator is invalid for atomic vectors 121: append 120: [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#108] 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#66] 96: func 83: renderFunc 82: output$plateID 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#81] 96: func 83: renderFunc 82: output$injvol 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#144] 96: func 83: renderFunc 82: output$extratext 1: runApp Warning: Error in $: $ operator is invalid for atomic vectors 106: 105: stop 104: read_plateid 97: renderUI [/usr/local/lib/R/site-library/bfabricShiny/shiny/extractPlateId/server.R#160] 96: func 83: renderFunc 82: output$extrameasurement 1: runApp TIME info current before reading plate ID from order ID: 2024-07-09 17:14:42.588431 TIME info for plate ID 3971 0.000301837921142578TIME info for plate ID 3908 0.000301837921142578TIME info for plate ID 3893 0.000301837921142578TIME info for plate ID 3775 0.000301837921142578TIME info for plate ID 3739 0.000301837921142578TIME info for plate ID 3738 0.000301837921142578TIME info for plate ID 3736 0.000301837921142578TIME info for plate ID 3696 0.000301837921142578TIME info for plate ID 3695 0.000301837921142578 saving 'login and webservicepassword' ... TIME info current before reading plate ID from order ID: 2024-07-09 17:14:43.780687 TIME info for plate ID 3948 0.000214815139770508TIME info for plate ID 3947 0.000214815139770508TIME info for plate ID 3946 0.000214815139770508TIME info for plate ID 3945 0.000214815139770508 saving 'login and webservicepassword' ... Creating table for plate ID = 3945 Reading plate 3945 Reading 96 samples Reading sample ID 721544 Reading sample ID 721582 Reading sample ID 721557 Reading sample ID 721587 Reading sample ID 721534 Reading sample ID 721607 Reading sample ID 721547 Reading sample ID 721549 Reading sample ID 721536 Reading sample ID 721560 Reading sample ID 721561 Reading sample ID 721542 Reading sample ID 721545 Reading sample ID 721616 Reading sample ID 721553 Reading sample ID 721555 Reading sample ID 721558 Reading sample ID 721595 Reading sample ID 721551 Reading sample ID 721524 Reading sample ID 721606 Reading sample ID 721613 Reading sample ID 721576 Reading sample ID 721584 Reading sample ID 721577 Reading sample ID 721569 Reading sample ID 721548 Reading sample ID 721568 Reading sample ID 721528 Reading sample ID 721559 Reading sample ID 721612 Reading sample ID 721532 Reading sample ID 721567 Reading sample ID 721591 Reading sample ID 721529 Reading sample ID 721575 Reading sample ID 721565 Reading sample ID 721540 Reading sample ID 721564 Reading sample ID 721600 Reading sample ID 721572 Reading sample ID 721604 Reading sample ID 721603 Reading sample ID 721579 Reading sample ID 721581 Reading sample ID 721583 Reading sample ID 721617 Reading sample ID 721523 Reading sample ID 721571 Reading sample ID 721585 Reading sample ID 721608 Reading sample ID 721533 Reading sample ID 721593 Reading sample ID 721596 Reading sample ID 721615 Reading sample ID 721566 Reading sample ID 721526 Reading sample ID 721590 Reading sample ID 721535 Reading sample ID 721543 Reading sample ID 721597 Reading sample ID 721599 Reading sample ID 721605 Reading sample ID 721550 Reading sample ID 721609 Reading sample ID 721614 Reading sample ID 721552 Reading sample ID 721541 Reading sample ID 721556 Reading sample ID 721601 Reading sample ID 721574 Reading sample ID 721539 Reading sample ID 721598 Reading sample ID 721588 Reading sample ID 721589 Reading sample ID 721531 Reading sample ID 721580 Reading sample ID 721611 Reading sample ID 721527 Reading sample ID 721563 Reading sample ID 721573 Reading sample ID 721525 Reading sample ID 721592 Reading sample ID 721537 Reading sample ID 721530 Reading sample ID 721538 Reading sample ID 721546 Reading sample ID 721554 Reading sample ID 721562 Reading sample ID 721570 Reading sample ID 721578 Reading sample ID 721586 Reading sample ID 721594 Reading sample ID 721602 Reading sample ID 721610 Reading sample ID 721618 TIME info loop processing full loop: 1.38241314888 TIME info about loop processing: 1.40802836418152 VS read_sample function: 1.39363098144531 Plate 3945 added TIME info current after plate ID 3945 is processed: 2024-07-09 17:15:09.188749 TIME info current after table creation: 2024-07-09 17:15:09.201207 Execution halted