Listening on http://127.0.0.1:41299

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Warning: In sliderInput(): `value` should be less than or equal to `max` (value = 0, 28, max = 11).
Warning: In sliderInput(): `value` should be less than or equal to `max` (value = 0, 28, max = 11).
Warning: In sliderInput(): `value` should be less than or equal to `max` (value = 0, 28, max = 11).
Warning: In sliderInput(): `value` should be less than or equal to `max` (value = 0, 28, max = 11).
Warning: In sliderInput(): `value` should be less than or equal to `max` (value = 0, 28, max = 11).
/scratch/DIAQC/qc/dump/p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw
Warning: In sliderInput(): `value` should be less than or equal to `max` (value = 0, 28, max = 11).
Warning: In sliderInput(): `value` should be less than or equal to `max` (value = 0, 28, max = 11).
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw
/srv/www/htdocs//p27492/Proteomics/QEXACTIVE_2/analytic_20220214/20220214_C27492_009_autoQC4L.raw
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning: Error in .rawrrSystem2Source: Rcode file to parse does not exist. '/var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe' failed for an unknown reason.
Please check the debug files:
	/tmp/Rtmpr19Rmk/file259c4fbd020a5.stderr
	/tmp/Rtmpr19Rmk/file259c4f2ab8e4b1.stdout
and the System Requirements
  189: stop
  188: .rawrrSystem2Source
  187: rawrr::readChromatogram
  186: <reactive:iRTprofileRawDDA> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#77]
  184: .func
  181: contextFunc
  180: env$runWith
  173: ctx$run
  172: self$.updateValue
  170: iRTprofileRawDDA
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#307]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotiRTDDAChromatograms
    1: runApp
Warning: Error in .rawrrSystem2Source: Rcode file to parse does not exist. '/var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe' failed for an unknown reason.
Please check the debug files:
	/tmp/Rtmpr19Rmk/file259c4fbd020a5.stderr
	/tmp/Rtmpr19Rmk/file259c4f2ab8e4b1.stdout
and the System Requirements
  193: <Anonymous>
  192: stop
  191: iRTprofileRawDDA
  186: <reactive:rtFittedAPEX> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#87]
  184: .func
  181: contextFunc
  180: env$runWith
  173: ctx$run
  172: self$.updateValue
  170: rtFittedAPEX
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#315]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotDDAiRTprofiles
    1: runApp
Warning: Error in .rawrrSystem2Source: Rcode file to parse does not exist. '/var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe' failed for an unknown reason.
Please check the debug files:
	/tmp/Rtmpr19Rmk/file259c4fbd020a5.stderr
	/tmp/Rtmpr19Rmk/file259c4f2ab8e4b1.stdout
and the System Requirements
  173: <Anonymous>
  172: stop
  171: rtFittedAPEX
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#328]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotDDAiRTfits
    1: runApp
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw
/srv/www/htdocs//p29276/Proteomics/QEXACTIVE_2/chiawei_20220830/20220830_006_autoQC4L_01NBA.raw
/srv/www/htdocs//p3000/Proteomics/QEXACTIVE_2/chiawei_20210921_newcolumn/20210921_C3000_004_autoQC4L.raw
/srv/www/htdocs//p33212/Proteomics/EXPLORIS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw
Warning: In sliderInput(): `value` should be less than or equal to `max` (value = 0, 28, max = 11).
/srv/www/htdocs//p29276/Proteomics/QEXACTIVE_2/chiawei_20220830/20220830_006_autoQC4L_01NBA.raw
/srv/www/htdocs//p3000/Proteomics/QEXACTIVE_2/chiawei_20200907_newColumn/20200907_04_autoQC4L.raw
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases


Execution halted