Listening on http://127.0.0.1:37923

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Warning: In sliderInput(): `value` should be less than or equal to `max` (value = 0, 28, max = 12).
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw
Warning: The select input "file" contains a large number of options; consider using server-side selectize for massively improved performance. See the Details section of the ?selectizeInput help topic.
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_003_S580219_K562_incl_iRT_Group_1.raw
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_007_autoQC4L.raw
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning: Error in .rawrrSystem2Source: Rcode file to parse does not exist. '/var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe' failed for an unknown reason.
Please check the debug files:
	/tmp/RtmpzLM7Lh/file341de63c43961.stderr
	/tmp/RtmpzLM7Lh/file341de67dfc25fa.stdout
and the System Requirements
  210: stop
  209: .rawrrSystem2Source
  208: rawrr::readChromatogram
  207: <reactive:iRTprofileRawDDA> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#77]
  205: .func
  202: contextFunc
  201: env$runWith
  194: ctx$run
  193: self$.updateValue
  191: iRTprofileRawDDA
  186: <reactive:rtFittedAPEX> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#87]
  184: .func
  181: contextFunc
  180: env$runWith
  173: ctx$run
  172: self$.updateValue
  170: rtFittedAPEX
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#315]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotDDAiRTprofiles
    1: runApp
Warning: Error in .rawrrSystem2Source: Rcode file to parse does not exist. '/var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe' failed for an unknown reason.
Please check the debug files:
	/tmp/RtmpzLM7Lh/file341de63c43961.stderr
	/tmp/RtmpzLM7Lh/file341de67dfc25fa.stdout
and the System Requirements
  173: <Anonymous>
  172: stop
  171: rtFittedAPEX
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#328]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotDDAiRTfits
    1: runApp
Warning: Error in .rawrrSystem2Source: Rcode file to parse does not exist. '/var/www/.cache/R/rawrr/rawrrassembly/rawrr.exe' failed for an unknown reason.
Please check the debug files:
	/tmp/RtmpzLM7Lh/file341de63c43961.stderr
	/tmp/RtmpzLM7Lh/file341de67dfc25fa.stdout
and the System Requirements
  172: <Anonymous>
  171: stop
  170: iRTprofileRawDDA
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#307]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotiRTDDAChromatograms
    1: runApp
Warning: In sliderInput(): `value` should be less than or equal to `max` (value = 0, 28, max = 12).


Execution halted