Listening on http://127.0.0.1:39413

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
Warning in predict.lm(fit, data.frame(xc = xx)) :
  prediction from rank-deficient fit; attr(*, "non-estim") has doubtful cases
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_007_autoQC4L.raw
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_003_S580219_K562_incl_iRT_Group_1.raw
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_004_S580219_K562_incl_iRT_Group_1.raw
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_007_autoQC4L.raw
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw
/srv/www/htdocs//p33212/Proteomics/EXPLORIS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw
/srv/www/htdocs//p33212/Proteomics/EXPLORIS_2/tobiasko_20231020/20231020_003_S580219_K562_incl_iRT_Group_1.raw
/srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw
calling iRTprofileRawDIA()  ...
Warning: Error in seq.default: 'to' must be of length 1
  191: stop
  190: seq.default
  187: <reactive:iRTprofileRawDIA> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#111]
  185: .func
  182: contextFunc
  181: env$runWith
  174: ctx$run
  173: self$.updateValue
  171: iRTprofileRawDIA
  168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#351]
  166: func
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotDIAiRTprofiles
    1: runApp
calling iRTprofileRawDIA()  ...
calling iRTprofileRawDIA()  ...
calling iRTprofileRawDIA()  ...
calling iRTprofileRawDIA()  ...
calling iRTprofileRawDIA()  ...
calling iRTprofileRawDIA()  ...
calling iRTprofileRawDIA()  ...
calling iRTprofileRawDIA()  ...
/srv/www/htdocs//p33212/Proteomics/EXPLORIS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw


Execution halted
Warning message:
agg could not write to the given file