Listening on http://127.0.0.1:40165 Attaching package: 'shinydashboard' The following object is masked from 'package:graphics': box Loading required package: readr Loading required package: reshape2 Loading required package: lattice Loading required package: rawrr Warning: Error in if: argument is of length zero 97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#372] 96: func 83: renderFunc 82: output$fileOutput 1: runApp calling iRTprofileRawDIA() ... calling iRTprofileRawDIA() ... calling iRTprofileRawDIA() ... calling iRTprofileRawDIA() ... Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cometPlot 1: runApp calling iRTprofileRawDIA() ... Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cometPlot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cometPlot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cometPlot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cometPlot 1: runApp Warning: Error in if: argument is of length zero 97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#372] 96: func 83: renderFunc 82: output$fileOutput 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cometPlot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$diannPlot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$diannPlot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$diannPlot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cometPlot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cometPlot 1: runApp Warning: Error in if: argument is of length zero 172: .checkRawFile 171: rawrr::readChromatogram 169: .tic [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#75] 168: renderPlot [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#478] 166: func 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$plotTIC 1: runApp Warning: Error in if: argument is of length zero 97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#375] 96: func 83: renderFunc 82: output$fileOutput 1: runApp /srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw Warning: Error in if: argument is of length zero 97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#375] 96: func 83: renderFunc 82: output$fileOutput 1: runApp /srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cometPlot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cometPlot 1: runApp Warning: Error in if: argument is of length zero 97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#375] 96: func 83: renderFunc 82: output$fileOutput 1: runApp /srv/www/htdocs//p33212/Proteomics/LUMOS_2/tobiasko_20231020/20231020_002_S580219_K562_incl_iRT_Group_1.raw Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$plotTIC 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$plotTIC 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$diannPlot 1: runApp Warning: Error in graphics::plot.new: figure margins too large 130: graphics::plot.new 127: startPNG 126: drawPlot 112: 96: drawReactive 83: renderFunc 82: output$cometPlot 1: runApp Execution halted There were 17 warnings (use warnings() to see them)