Listening on http://127.0.0.1:40339

Attaching package: 'shinydashboard'

The following object is masked from 'package:graphics':

    box

Loading required package: readr
Loading required package: reshape2
Loading required package: lattice
Loading required package: rawrr
Loading required package: bfabricShiny

Attaching package: 'bfabricShiny'

The following object is masked from 'package:base':

    save

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in writeImpl: Text to be written must be a length-one character vector
  104: stop
  103: writeImpl
  102: textWriter$write
  101: tagWrite
  100: doRenderTags
   99: processDeps
   98: transform
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$bfabricInstrumentEventsOutput
    1: runApp
Warning: Error in writeImpl: Text to be written must be a length-one character vector
  104: stop
  103: writeImpl
  102: textWriter$write
  101: tagWrite
  100: doRenderTags
   99: processDeps
   98: transform
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$bfabricInstrumentEventsOutput
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in as.vector: cannot coerce type 'closure' to vector of type 'character'
  108: as.character.default
  106: lapply
  103: FUN
  102: lapply
  101: tagWrite
  100: doRenderTags
   99: processDeps
   98: transform
   97: func
   95: f
   94: Reduce
   85: do
   84: hybrid_chain
   83: renderFunc
   82: output$bfabricInstrumentEventsOutput
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotTIC
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#479]
  96: func
  83: renderFunc
  82: output$fileOutput
   1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#479]
  96: func
  83: renderFunc
  82: output$fileOutput
   1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotTIC
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp
Error in parse(file, keep.source = FALSE, srcfile = src, encoding = enc) : 
  /export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/ui.R:63:15: unexpected symbol
62:               hr()
63:               fluidRow
                  ^
Warning in readLines(path) :
  incomplete final line found on '/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/ui.R'
Possible missing comma at:
63:              fluidRow(box(htmlOutput("bfabricInstrumentEventsOutput")))
                 ^
Warning: Error in sourceUTF8: Error sourcing /export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/ui.R
  1: runApp
Error in parse(file, keep.source = FALSE, srcfile = src, encoding = enc) : 
  /export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/ui.R:63:15: unexpected symbol
62:               hr()
63:               fluidRow
                  ^
Warning in readLines(path) :
  incomplete final line found on '/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/ui.R'
Possible missing comma at:
63:              fluidRow(box(htmlOutput("bfabricInstrumentEventsOutput")))
                 ^
Warning: Error in sourceUTF8: Error sourcing /export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/ui.R
  1: runApp
Error in parse(file, keep.source = FALSE, srcfile = src, encoding = enc) : 
  /export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/ui.R:63:15: unexpected symbol
62:               hr()
63:               fluidRow
                  ^
Warning in readLines(path) :
  incomplete final line found on '/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/ui.R'
Possible missing comma at:
63:              fluidRow(box(htmlOutput("bfabricInstrumentEventsOutput")))
                 ^
Warning: Error in sourceUTF8: Error sourcing /export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/ui.R
  1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
r.squared;slope;intercept
r.squared;slope;intercept;n
r.squared;slope;intercept;n;intensity.max
r.squared;slope;intercept;n
r.squared;slope;intercept
r.squared;slope
r.squared

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
runtime

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in if: argument is of length zero
  97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#518]
  96: func
  83: renderFunc
  82: output$fileOutput
   1: runApp
r.squared;slope;intercept

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$plotTIC
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in data.frame: arguments imply differing number of rows: 1, 0
  125: stop
  124: data.frame
  123: FUN [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#171]
  122: lapply
  120: <reactive:bfabricInstrumentEvents> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#165]
  104: bfabricInstrumentEvents
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#753]
   96: func
   83: renderFunc
   82: output$bfabricInstrumentEventsOutput
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$diannPlot
    1: runApp
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in data.frame: arguments imply differing number of rows: 1, 0
  125: stop
  124: data.frame
  123: FUN [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#171]
  122: lapply
  120: <reactive:bfabricInstrumentEvents> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#165]
  104: bfabricInstrumentEvents
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#753]
   96: func
   83: renderFunc
   82: output$bfabricInstrumentEventsOutput
    1: runApp
Warning: Error in data.frame: arguments imply differing number of rows: 1, 0
  125: stop
  124: data.frame
  123: FUN [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#171]
  122: lapply
  120: <reactive:bfabricInstrumentEvents> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#165]
  104: bfabricInstrumentEvents
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#753]
   96: func
   83: renderFunc
   82: output$bfabricInstrumentEventsOutput
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$cometPlot
    1: runApp
Warning: Error in <reactive:bfabricInstrumentEvents>: object 'rv' not found
  122: lapply [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#165]
  120: <reactive:bfabricInstrumentEvents> [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#165]
  104: bfabricInstrumentEvents
   97: renderUI [/export/data01/scratch/DIAQC/qc/inst/shiny/fgczmsqc-dashboard/server.R#757]
   96: func
   83: renderFunc
   82: output$bfabricInstrumentEventsOutput
    1: runApp

Warning: Error in graphics::plot.new: figure margins too large
  130: graphics::plot.new
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in <Anonymous>: too many open devices
  129: <Anonymous>
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp

Warning: Error in <Anonymous>: too many open devices
  129: <Anonymous>
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp
r.squared;slope;intercept
Warning: Error in <Anonymous>: too many open devices
  129: <Anonymous>
  127: startPNG
  126: drawPlot
  112: <reactive:plotObj>
   96: drawReactive
   83: renderFunc
   82: output$autoQC01Plot
    1: runApp